2025
Lifespan Tree of Brain Anatomy: Diagnostic Values for Motor and Cognitive Neurodegenerative Diseases 
   Pierrick Coupé, Boris Mansencal, José V Manjón, Patrice Péran, Wassilios G Meissner, Thomas Tourdias, Vincent Planche 
   Human Brain Mapping, 2025, 46 (13), ⟨10.1002/hbm.70336⟩
Robust deep MRI contrast synthesis using a prior-based and task-oriented 3D network 
   Sergio Morell-Ortega, Marina Ruiz-Perez, Marien Gadea, Roberto Vivo-Hernando, Gregorio Rubio, Fernando Aparici, Mariam de la Iglesia-Vaya, Thomas Tourdias, Boris Mansencal, Pierrick Coupé, José V Manjón 
   Imaging Neuroscience, 2025, 3, ⟨10.1162/IMAG.a.116⟩
Anatomical progression of genetic frontotemporal lobar degeneration across the lifespan 
   Vincent Planche, Boris Mansencal, Vladimir Fonov, José Manjon, Thomas Tourdias, Arabella Bouzigues, Lucy Russell, Phoebe Foster, Eve Ferry-Bolder, John van Swieten, Lize Jiskoot, Harro Seelaar, Raquel Sanchez-Valle, Robert Laforce, Caroline Graff, Daniela Galimberti, Rik Vandenberghe, Alexandre de Mendonça, Pietro Tiraboschi, Isabel Santana, Alexander Gerhard, Johannes Levin, Sandro Sorbi, Markus Otto, Maxime Bertoux, Thibaud Lebouvier, Chris Butler, Isabelle Le Ber, Elizabeth Finger, Maria Carmela Tartaglia, Mario Masellis, James Rowe, Matthis Synofzik, Fermin Moreno, Barbara Borroni, Jonathan Rohrer, D Louis Collins, Simon Ducharme, Pierrick Coupé 
   Brain - A Journal of Neurology , 2025, ⟨10.1093/brain/awaf195⟩
DeepCERES: A deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI 
   Sergio Morell-Ortega, Marina Ruiz-Perez, Marien Gadea, Roberto Vivo-Hernando, Gregorio Rubio, Fernando Aparici, Maria de La Iglesia-Vaya, Gwenaelle Catheline, Boris Mansencal, Pierrick Coupé, José V Manjón 
   NeuroImage, 2025, 308, pp.121063. ⟨10.1016/j.neuroimage.2025.121063⟩
petBrain: a new pipeline for amyloid, Tau tangles and neurodegeneration quantification using PET and MRI 
   Pierrick Coupé, Boris Mansencal, Floréal Morandat, Sergio Morell-Ortega, Nicolas Villain, José V Manjón, Vincent Planche 
   Alzheimer’s Research and Therapy, 2025, 17 (1), pp.209. ⟨10.1186/s13195-025-01839-y⟩
Enhancing cell instance segmentation in scanning electron microscopy images via a deep contour closing operator 
   Florian Robert, Alexia Calovoulos, Laurent Facq, Fanny Decoeur, Etienne Gontier, Christophe Grosset, Baudouin Denis de Senneville 
   Computers in Biology and Medicine, 2025, 190, pp.109972. ⟨10.1016/j.compbiomed.2025.109972⟩
FLAIRBrainSeg: Fine-grained brain segmentation using FLAIR MRI only 
   Edern Le Bot, Rémi Giraud, Boris Mansencal, Thomas Tourdias, Josè V Manjon, Pierrick Coupé 
   Medical Imaging with Deep Learning (MIDL 2025), Jul 2025, Salt Lake City, UT, United States
A deep learning-assisted hybrid model for electric dosimetry in electroporation therapies 
   Kylian Desier, Luc Lafitte, Laurent Facq, Olivier Sutter, Olivier Sutter, Clair Poignard, Baudouin Denis de Senneville 
   CBMS 2025 - International Symposium on Computer-Based Medical Systems, IEEE, Jun 2025, Madrid, Spain. pp.1-4
Automatic detection of pleural plaques presence in asbestos-exposed individuals 
   Yannis Petitpas, Ilyes Ben Lala, Fabien Baldacci, Gaël Dournes, Jean Claude Pairon, Baudouin Denis de Senneville 
   CBMS 2025 - International Symposium on Computer-Based Medical Systems, IEEE, Jun 2025, Madrid, Spain
A Comprehensive Framework for Unsupervised Deep Analysis of Tissue Bioarchitecture 
   Florian Robert, Alexia Calovoulos, Laurent Facq, Fanny Decoeur, Etienne Gontier, Christophe François Grosset, Baudouin Denis de Senneville 
   International Symposium on Computer-Based Medical Systems (CBMS), IEEE, Jun 2025, Madrid (ES), Spain
3D Semantic Cell Segmentation via Propagation of 2D results and Integration of Intercellular Priors 
   Florian Robert, Alexia Calovoulos, Laurent Facq, Fanny Decoeur, Etienne Gontier, Christophe François Grosset, Baudouin Denis de Senneville 
   International Symposium on Computer-Based Medical Systems (CBMS), IEEE, Jun 2025, Madrid (ES), Spain
Deep modelling of electric field distribution for clinical electroporation ablation therapies 
   Kylian Desier, Luc Lafitte, Laurent Facq, Olivier Sutter, Olivier Seror, Clair Poignard, Baudouin Denis de Senneville 
   ISBI 2025 - International Symposium on Biomedical Imaging, IEEE, Apr 2025, Houston (TX), United States. pp.1-5
Improving cell instance segmentation in scanning electron microscopy via semantic image synthesis 
   Florian Robert, Alexia Calovoulos, Laurent Facq, Fanny Decoeur, Etienne Gontier, Christophe F Grosset, Baudouin Denis de Senneville 
   ISBI 2025 - International Symposium on Biomedical Imaging, IEEE, Apr 2025, Houston, United States
3D semantic segmentation of airway abnormalities on UTE-MRI with reinforcement learning on deep supervision 
   Amel Imene Hadj Bouzid, Fabien Baldacci, Baudouin Denis de Senneville, Wadie Ben Hassen, Patrick Berger, Ilyes Benlala, Gaël Dournes 
   ISBI 2025 - International Symposium on Biomedical Imaging, IEEE, Apr 2025, Houston (TX), United States
2024
Adaptive local boundary conditions to improve deformable image registration 
   Eloïse Inacio, Luc Lafitte, Laurent Facq, Clair Poignard, Baudouin Denis de Senneville 
   Physics in Medicine and Biology, 2024, 69 (16), pp.165025. ⟨10.1088/1361-6560/ad6952⟩
Assessment of a Multivariable Model using MRI-Radiomics, Age and Sex for the Classification of Hepatocellular Adenoma Subtypes 
   Guillaume Declaux, Baudouin Denis de Senneville, Hervé Trillaud, Paulette Bioulac-Sage, Charles Balabaud, Jean-Frédéric Blanc, Laurent Facq, Nora Frulio 
   Research in Diagnostic and Interventional Imaging, 2024, 10, pp.100046. ⟨10.1016/j.redii.2024.100046⟩
Vulnerability of Thalamic Nuclei at CSF Interface During the Entire Course of Multiple Sclerosis 
   Ismail Koubiyr, Takayuki Yamamoto, Simon Blyau, Reda A Kamroui, Boris Mansencal, Vincent Planche, Laurent Petit, Manojkumar Saranathan, Romain Casey, Aurélie Ruet, Bruno Brochet, José V Manjón, Vincent Dousset, Pierrick Coupé, Thomas Tourdias 
   Neurology Neuroimmunology & Neuroinflammation, 2024, 11 (3), ⟨10.1212/NXI.0000000000200222⟩
Brain Structure Ages - A new biomarker for multi-disease classification 
   Huy-Dung Nguyen, Michaël Clément, Boris Mansencal, Pierrick Coupé 
   Human Brain Mapping, 2024, 45 (1), ⟨10.1002/hbm.26558⟩
Data-driven normative values based on generative manifold learning for quantitative MRI 
   Arnaud Attyé, Félix Renard, Vanina Anglade, Alexandre Krainik, Philippe Kahane, Boris Mansencal, Pierrick Coupé, Fernando Calamante 
   Scientific Reports, 2024, 14 (1), pp.7563. ⟨10.1038/s41598-024-58141-4⟩
The Cerebellum and Cognitive Function: Anatomical Evidence from a Transdiagnostic Sample 
   Indrit Bègue, Yannis Elandaloussi, Farnaz Delavari, Hengyi Cao, Alexandra Moussa-Tooks, Mathilde Roser, Pierrick Coupé, Marion Leboyer, Stefan Kaiser, Josselin Houenou, Roscoe Brady, Charles Laidi 
   The Cerebellum, In press, ⟨10.1007/s12311-023-01645-y⟩
Staging of progressive supranuclear palsy-Richardson syndrome using MRI brain charts for the human lifespan 
   Vincent Planche, Boris Mansencal, Jose V Manjon, Wassilios Meissner, Thomas Tourdias, Pierrick Coupé 
   Brain Communications, 2024, 6 (2), pp.fcae055. ⟨10.1093/braincomms/fcae055⟩
Adapted nnU-Net: A Robust Baseline for Cross-Modality Synthesis and Medical Image Inpainting 
   Arthur Longuefosse, Edern Le Bot, Baudouin Denis de Senneville, Rémi Giraud, Boris Mansencal, Pierrick Coupé, Pascal Desbarats, Fabien Baldacci 
   SASHIMI 2024 - International Workshop on Simulation and Synthesis in Medical Imaging, Oct 2024, Marrakesh, Morocco. pp.24-33, ⟨10.1007/978-3-031-73281-2_3⟩
On the use of perceptual loss for fine structure generation: Illustration on lung MR to CT synthesis 
   Arthur Longuefosse, Baudouin Denis de Senneville, Gaël Dournes, Ilyes Benlala, Pascal Desbarats, Fabien Baldacci 
   ISBI 2024 - 21st IEEE International Symposium on Biomedical Imaging, May 2024, Athens, Greece. pp.1-5, ⟨10.1109/ISBI56570.2024.10635435⟩
Incorporating 3D information in 2.5D networks: strategies for MR to CT synthesis 
   Arthur Longuefosse, Baudouin Denis de Senneville, Gaël Dournes, Ilyes Benlala, Pascal Desbarats, Fabien Baldacci 
   ISBI 2024 - IEEE 21st International Symposium on Biomedical Imaging, May 2024, Athens, Greece. pp.1-5, ⟨10.1109/ISBI56570.2024.10635859⟩
CT Evaluation of 2D and 3D Holistic Deep Learning Methods for the Volumetric Segmentation of Airway Lesions 
   Amel Imene Hadj Bouzid, Baudouin Denis de Senneville, Fabien Baldacci, Pascal Desbarats, Patrick Berger, Ilyes Benlala, Gaël Dournes 
   ISBI 2024 - 21st IEEE International Symposium on Biomedical Imaging, May 2024, Athènes, Greece. pp.1-5, ⟨10.1109/ISBI56570.2024.10635201⟩
2023
Deep grading for MRI-based differential diagnosis of Alzheimer’s disease and Frontotemporal dementia 
   Huy-Dung Nguyen, Michaël Clément, Vincent Planche, Boris Mansencal, Pierrick Coupé 
   Artificial Intelligence in Medicine, 2023, 144, pp.102636. ⟨10.1016/j.artmed.2023.102636⟩
Lifespan neurodegeneration of the human brain in multiple sclerosis 
   Pierrick Coupé, Vincent Planche, Boris Mansencal, Reda A Kamroui, Ismail Koubiyr, José V Manjòn, Thomas Tourdias 
   Human Brain Mapping, 2023, 44 (17), pp.5602-5611. ⟨10.1002/hbm.26464⟩
Integration of operator-validated contours in deformable image registration for dose accumulation in radiotherapy 
   Lando Bosma, Mario Ries, Baudouin Denis de Senneville, Bas Raaymakers, Cornel Zachiu 
   Physics and Imaging in Radiation Oncology, 2023, 27, pp.100483. ⟨10.1016/j.phro.2023.100483⟩
Generating high-resolution synthetic CT from lung MRI with ultrashort echo-times: initial evaluation in cystic fibrosis 
   Arthur Longuefosse, Julien Raoult, Ilyes Benlala, Baudouin Denis de Senneville, Thomas Benkert, Julie Macey, Stéphanie Bui, Patrick Berger, Gilbert Ferretti, Jean-Yves Gaubert, Renan Liberge, Antoine Hutt, Baptiste Morel, François Laurent, Fabien Baldacci, Gaël Dournes 
   Radiology, 2023, 308 (1), ⟨10.1148/radiol.230052⟩
Non-Contrast-Enhanced Functional Lung MRI to Evaluate Treatment Response of Allergic Bronchopulmonary Aspergillosis in Patients With Cystic Fibrosis: A Pilot Study 
   Ilyes Benlala, Rabea Klaar, Thomas Gaass, Julie Macey, Stéphanie Bui, Baudouin Denis de Senneville, Patrick Berger, François Laurent, Gael Dournes, Julien Dinkel 
   Journal of Magnetic Resonance Imaging, In press, ⟨10.1002/jmri.28844⟩
Understanding the relationship between cerebellar structure and social abilities 
   Yannis Elandaloussi, Dorothea L Floris, Pierrick Coupé, Edouard Duchesnay, Angeline Mihailov, Antoine Grigis, Indrit Bègue, Julie Victor, Vincent Frouin, Marion Leboyer, Josselin Houenou, Charles Laidi 
   Molecular Autism, 2023, 14 (1), pp.18. ⟨10.1186/s13229-023-00551-8⟩
3D motion strategy for online volumetric thermometry using simultaneous multi-slice EPI at 1.5T: an evaluation study 
   Valéry Ozenne, Pierre Bour, Baudouin Denis de Senneville, Bruno Quesson 
   International Journal of Hyperthermia, 2023, 40 (1), ⟨10.1080/02656736.2023.2194595⟩
Towards better Interpretable and Generalizable AD detection using Collective Artificial Intelligence 
   Huy-Dung Nguyen, Michaël Clément, Boris Mansencal, Pierrick Coupé 
   Computerized Medical Imaging and Graphics, 2023, 104, ⟨10.1016/j.compmedimag.2022.102171⟩
Midbrain structure volume, estimated myelin and functional connectivity in idiopathic generalised epilepsy 
   Andrea Mckavanagh, Adam Ridzuan-Allen, Barbara A.K. Kreilkamp, Yachin Chen, José V Manjón, Pierrick Coupé, Martyn Bracewell, Kumar Das, Peter N Taylor, Anthony G Marson, Simon S Keller 
   Epilepsy & Behavior, 2023, 140, pp.109084. ⟨10.1016/j.yebeh.2023.109084⟩
Technical Note: Intensity-based quality assurance criteria for deformable image registration in image-guided radiotherapy 
   Lando Bosma, Cornel Zachiu, Baudouin Denis de Senneville, Bas Raaymakers, Mario Ries 
   Medical Physics, 2023, 50 (9), pp.5715-5722. ⟨10.1002/mp.16367⟩
Anatomical MRI staging of frontotemporal dementia variants 
   Vincent Planche, Boris Mansencal, Jose V Manjon, Thomas Tourdias, Gwenaëlle Catheline, Pierrick Coupé 
   Alzheimer’s & Dementia : the Journal of the Alzheimer’s Association, 2023, 19 (8), pp.3283-3294. ⟨10.1002/alz.12975⟩
Preserved Navigation abilities and Spatio-Temporal Memory in individuals with Autism Spectrum Disorder 
   Charles Laidi, Nathan Neu, Aurélie Watilliaux, Axelle Martinez-Teruel, Mihoby Razafinimanana, Jennifer Boisgontier, Sevan Hotier, Marc‐antoine d’Albis, Richard Delorme, Anouck Amestoy, Štefan Holiga, Myriam Ly‐le Moal, Pierrick Coupé, Marion Leboyer, Josselin Houenou, Laure Rondi-Reig, Anne‐lise Paradis 
   Autism Research, 2023, 16 (2), pp.280-293. ⟨10.1002/aur.2865⟩
3D Transformer based on deformable patch location for differential diagnosis between Alzheimer’s disease and Frontotemporal dementia 
   Huy-Dung Nguyen, Michaël Clément, Boris Mansencal, Pierrick Coupé 
   14th International Workshop, MLMI 2023, Held in Conjunction with MICCAI 2023, Oct 2023, Vancouver, Canada. pp.53-63, ⟨10.1007/978-3-031-45676-3_6⟩
Lung CT Synthesis Using GANs with Conditional Normalization on Registered Ultrashort Echo-Time MRI 
   Arthur Longuefosse, Gaël Dournes, Ilyes Benlala, Baudouin Denis de Senneville, François Laurent, Pascal Desbarats, Fabien Baldacci 
   ISBI 2023 - 20th IEEE International Symposium on Biomedical Imaging, Apr 2023, Cartagena de Indias, Colombia. pp.1-5, ⟨10.1109/ISBI53787.2023.10230331⟩
MR to CT synthesis using GANs : a practical guide applied to thoracic imaging 
   Arthur Longuefosse, Baudouin Denis de Senneville, Gaël Dournes, Ilyes Benlala, François Laurent, Pascal Desbarats, Fabien Baldacci 
   VISIGRAPP 2023 - International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications, Feb 2023, Lisbon, Portugal. pp.268-274, ⟨10.5220/0011895700003417⟩
2022
Endoscopic in-situ recognition of urinary stones during LASER-induced stone fragmentation: a modern, effective and essential approach in the diagnostic process in urolithiasis 
   Vincent Estrade, Baudouin Denis de Senneville, Laurent Facq, Michel Daudon 
   Comptes Rendus. Chimie, 2022, 25 (S1), pp.407-416. ⟨10.5802/crchim.162⟩
Longitudinal detection of new MS lesions using deep learning 
   Reda Abdellah Kamraoui, Boris Mansencal, José V. Manjón, Pierrick Coupé 
   Frontiers in Neuroimaging, 2022, ⟨10.3389/fnimg.2022.948235⟩
Deep morphological recognition of kidney stones using intra-operative endoscopic digital videos 
   Vincent Estrade, Michel Daudon, Emmanuel Richard, Jean-Christophe Bernhard, Franck Bladou, Gregoire Robert, Laurent Facq, Baudouin Denis de Senneville 
   Physics in Medicine and Biology, 2022, 67 (16), pp.165006. ⟨10.1088/1361-6560/ac8592⟩
HAVAs : Alzheimer disease detection using normative and pathological lifespan models 
   Pierrick Coupé, José V. Manjón, Boris Mansencal, Thomas Tourdias, Gwénaëlle Catheline, Vincent Planche 
   Human Brain Mapping, 2022, ⟨10.1002/hbm.25850⟩
Structural progression of Alzheimer’s disease over decades: the MRI staging scheme 
   Vincent Planche, José Manjon, Boris Mansencal, Enrique Lanuza, Thomas Tourdias, Gwenaëlle Catheline, Pierrick Coupé 
   Brain Communications, 2022, 4 (3), ⟨10.1093/braincomms/fcac109⟩
Microstructural Gray Matter Integrity Deteriorates After an Ischemic Stroke and Is Associated with Processing Speed 
   Sharmila Sagnier, Gwenaëlle Catheline, Bixente Dilharreguy, Pierre-Antoine Linck, Pierrick Coupé, Fanny Munsch, Antoine Bigourdan, Mathilde Poli, Sabrina Debruxelles, Pauline Renou, Stéphane Olindo, François Rouanet, Vincent Dousset, Thomas Tourdias, Igor Sibon 
   Translational stroke research, 2022, ⟨10.1007/s12975-022-01020-9⟩
Normal-Appearing White Matter Deteriorates over the Year After an Ischemic Stroke and Is Associated with Global Cognition 
   Sharmila Sagnier, Gwenaëlle Catheline, Bixente Dilharreguy, Pierre-Antoine Linck, Pierrick Coupé, Fanny Munsch, Antoine Bigourdan, Mathilde Poli, Sabrina Debruxelles, Pauline Renou, Stéphane Olindo, François Rouanet, Vincent Dousset, Thomas Tourdias, Igor Sibon 
   Translational stroke research, 2022, ⟨10.1007/s12975-022-00988-8⟩
Towards automatic recognition of pure and mixed stones using intra‐operative endoscopic digital images 
   Vincent Estrade, Michel Daudon, Emmanuel Richard, Jean‐christophe Bernhard, Franck Bladou, Grégoire Robert, Baudouin Denis de Senneville 
   BJU International, 2022, 129 (2), pp.234-242. ⟨10.1111/bju.15515⟩
Deep Learning for the Automatic Quantification of Pleural Plaques in Asbestos-Exposed Subjects 
   Ilyes Benlala, Baudouin Denis de Senneville, Gael Dournes, Morgane Menant, Celine Gramond, Isabelle Thaon, Benedicte Clin, Patrick Brochard, Antoine Gislard, Pascal Andujar, Soizick Chammings, Justine Gallet, Aude Lacourt, Fleur Delva, Christophe Paris, Gilbert Ferretti, Jean-Claude Pairon, Francois Laurent 
   International Journal of Environmental Research and Public Health, 2022, 19 (3), pp.1417. ⟨10.3390/ijerph19031417⟩
DeepLesionBrain: Towards a broader deep-learning generalization for multiple sclerosis lesion segmentation 
   Reda Abdellah Kamraoui, Vinh-Thong Ta, Thomas Tourdias, Boris Mansencal, José Manjon, Pierrick Coupé 
   Medical Image Analysis, 2022, 76, pp.102312. ⟨10.1016/j.media.2021.102312⟩
Deep Anomaly Generation: An Image Translation Approach of Synthesizing Abnormal Banded Chromosome Images 
   Lukas Uzolas, Javier Rico, Pierrick Coupé, Juan C Sanmiguel, György Cserey 
   IEEE Access, 2022, 10, pp.59090-59098. ⟨10.1109/ACCESS.2022.3178786⟩
Cerebellar atypicalities in autism? 
   Charles Laidi, Dorothea L Floris, Julian Tillmann, Yannis Elandaloussi, Mariam Zabihi, Tony Charman, Thomas Wolfers, Sarah Durston, Caroline Moessnang, Flavio Dell’acqua, Christine Ecker, Eva Loth, Declan Murphy, Simon Baron-Cohen, Jan K Buitelaar, Andre F Marquand, Christian F Beckmann, Vincent Frouin, Marion Leboyer, Edouard Duchesnay, Pierrick Coupé, Josselin Houenou 
   Biological Psychiatry, In press, ⟨10.1016/j.biopsych.2022.05.020⟩
Artificial intelligence in CT for quantifying lung changes in the era of CFTR modulators 
   Gael Dournes, Chase S Hall, Matthew M Willmering, Alan S Brody, Julie Macey, Stephanie Bui, Baudouin Denis de Senneville, Patrick Berger, François Laurent, Ilyes Benlala, Jason Woods 
   European Respiratory Journal, 2022, 59, pp.2100844. ⟨10.1183/13993003.00844-2021⟩
vol2Brain: A new online Pipeline for whole Brain MRI analysis 
   José V Manjón, José Romero, Roberto Vivo-Hernando, Gregorio Rubio, Fernando Aparici, Mariam de la Iglesia-Vaya, Pierrick Coupé 
   Frontiers in Neuroinformatics, 2022, 16, pp.862865. ⟨10.3389/fninf.2022.862805⟩
Structural connectivity mapping in human hippocampal-subfields using super-resolution hybrid diffusion imaging: a feasibility study 
   Nahla Elsaid, Pierrick Coupé, Andrew Saykin, Yu-Chien Wu 
   Neuroradiology, In press, ⟨10.1007/s00234-022-02968-z⟩
A novel deep learning based hippocampus subfield segmentation method 
   José V Manjón, José E Romero, Pierrick Coupe 
   Scientific Reports, 2022, 12 (1), pp.1333. ⟨10.1038/s41598-022-05287-8⟩
Interpretable differential diagnosis for Alzheimer’s disease and Frontotemporal dementia 
   Huy-Dung Nguyen, Michaël Clément, Boris Mansencal, Pierrick Coupé 
   International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2022, Resorts World Convention Centre, Singapore. ⟨10.1007/978-3-031-16431-6_6⟩
Automated needle localisation for electric field computation during an electroporation ablation 
   Eloïse Inacio, Luc Lafitte, Olivier Sutter, Olivier Seror, Baudouin Denis de Senneville, Clair Poignard 
   IEEE - MELECON 2022 - 21st Mediterranean Electrotechnical Conference, Jun 2022, Palerme, Italy. ⟨10.1109/MELECON53508.2022.9842866⟩
2021
HAVAs: Alzheimer’s Disease Detection using Normative and Pathological Lifespan Models 
   Pierrick Coupé, José Manjón, Boris Mansencal, Thomas Tourdias, Gwénaëlle Catheline, Vincent Planche 
   The Journal of prevention of Alzheimer’s disease, 2021, 13 (5), pp.716-724. ⟨10.1101/2021.12.03.21267230⟩
Deep Learning based MRI contrast synthesis using full volume prediction 
   Jose V Manjon, Jose E Romero, Pierrick Coupé 
   Biomedical Physics & Engineering Express, 2021, ⟨10.1088/2057-1976/ac3c64⟩
Voluntary Wheel Running Does Not Enhance Radiotherapy Efficiency in a Preclinical Model of Prostate Cancer: The Importance of Physical Activity Modalities? 
   Suzanne Dufresne, Cindy Richard, Arthur Dieumegard, Luz Orfila, Gregory Delpon, Sophie Chiavassa, Brice Martin, Laurent Rouvière, Jean-Michel Escoffre, Edward Oujagir, Baudouin Denis de Senneville, Ayache Bouakaz, Nathalie Rioux-Leclercq, Vincent Potiron, Amélie Rébillard 
   Cancers, 2021, 13 (21), pp.5402. ⟨10.3390/cancers13215402⟩
Improved 18-FDG PET/CT diagnosis of multiple myeloma diffuse disease by radiomics analysis 
   Charles Mesguich, Elif Hindie, Baudouin Denis de Senneville, Ghoufrane Tlili, Jean-Baptiste Pinaquy, Gerald Marit, Olivier Saut 
   Nuclear Medicine Communications, 2021, 42 (10), pp.1135-1143. ⟨10.1097/MNM.0000000000001437⟩
Quantitative investigation of dose accumulation errors from intra-fraction motion in MRgRT for prostate cancer 
   Lando Bosma, Cornel Zachiu, Mario Ries, Baudouin Denis de Senneville, Bas Raaymakers 
   Physics in Medicine and Biology, 2021, 66 (6), pp.065002. ⟨10.1088/1361-6560/abe02a⟩
Cerebral blood flow and cerebrovascular reactivity are preserved in a mouse model of cerebral microvascular amyloidosis 
   Leon P Munting, Marc Pp Derieppe, Ernst Suidgeest, Lydiane Hirschler, Matthias Jp van Osch, Baudouin Denis de Senneville, Louise van Der Weerd 
   eLife, 2021, 10, ⟨10.7554/eLife.61279⟩
Deep correction of breathing-related artifacts in real-time MR-thermometry 
   Baudouin Denis de Senneville, Pierrick Coupé, Mario Ries, Laurent Facq, Chrit Moonen 
   Computerized Medical Imaging and Graphics, 2021, pp.101834. ⟨10.1016/j.compmedimag.2020.101834⟩
Toward improved endoscopic examination of urinary stones: a concordance study between endoscopic digital pictures vs. Microscopy 
   Vincent Estrade, Baudouin Denis de Senneville, Paul Meria, Christophe Almeras, Franck Bladou, Jean-Christophe Bernhard, Gregoire Robert, Olivier Traxer, Michel Daudon 
   BJU International, 2021, 128 (3), pp.319-330. ⟨10.1111/bju.15312⟩
Towards a unified analysis of cerebellum maturation and aging across the entire lifespan: A MRI analysis 
   José E Romero, Pierrick Coupé, Enrique Lanuza, Gwenaelle Catheline, José V Manjón 
   Human Brain Mapping, 2021, 42 (5), pp.1287-1303. ⟨10.1002/hbm.25293⟩
Deep Grading based on Collective Artificial Intelligence for AD Diagnosis and Prognosis 
   Huy-Dung Nguyen, Michaël Clément, Boris Mansencal, Pierrick Coupé 
   Workshop on Interpretability of Machine Intelligence in Medical Image Computing at MICCAI 2021, 2021, Strasbourg, France. ⟨10.1007/978-3-030-87444-5_3⟩
2020
Anatomically-adaptive multi-modal image registration for image-guided external-beam radiotherapy 
   C Zachiu, Baudouin Denis de Senneville, T Willigenburg, J Voort van Zyp, J C J de Boer, B W Raaymakers, M Ries 
   Physics in Medicine and Biology, 2020, 65 (21), pp.215028. ⟨10.1088/1361-6560/abad7d⟩
Multi-scale Graph-based Grading for Alzheimer’s Disease Prediction 
   Kilian Hett, Vinh-Thong Ta, Jose Vicente Manjon, Pierrick Coupé 
   Medical Image Analysis, In press
AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation 
   Pierrick Coupé, Boris Mansencal, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón 
   NeuroImage, 2020, 219, pp.117026. ⟨10.1016/j.neuroimage.2020.117026⟩
Editorial: Bubbles, Droplets and Micelles for Acoustically-Mediated Drug/Gene Delivery 
   Jean-Michel Escoffre, Baudouin Denis de Senneville, Noboru Sasaki, Marc Derieppe 
   Frontiers in Pharmacology, 2020, 11, pp.954. ⟨10.3389/fphar.2020.00954⟩
Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort 
   Alexandre Morin, Jorge Samper-González, Anne Bertrand, Sebastian Ströer, Didier Dormont, Aline Mendes, Pierrick Coupé, Jamila Ahdidan, Marcel Lévy, Dalila Samri, Harald Hampel, Bruno Dubois, Marc Teichmann, Stéphane Epelbaum, Olivier Colliot 
   Journal of Alzheimer’s Disease, 2020, pp.1-10. ⟨10.3233/JAD-190594⟩
Numerical modelling challenges for clinical electroporation ablation technique of liver tumors 
   Olivier Gallinato, Baudouin Denis de Senneville, Olivier Seror, Clair Poignard 
   Mathematical Modelling of Natural Phenomena, 2020, 15, ⟨10.1051/mmnp/2019037⟩
Normal-Appearing White Matter Integrity Is a Predictor of Outcome After Ischemic Stroke 
   Sharmila Sagnier, Gwenaelle Catheline, Bixente Dilharreguy, Pierre-Antoine Linck, Pierrick Coupé, Fanny Munsch, Antoine Bigourdan, Sabrina Debruxelles, Mathilde Poli, Stéphane Olindo, Pauline Renou, François Rouanet, Vincent Dousset, Sylvie Berthoz, Thomas Tourdias, Igor Sibon 
   Stroke, 2020, 51 (2), pp.449-456. ⟨10.1161/STROKEAHA.119.026886⟩
Biomechanical quality assurance criteria for deformable image registration algorithms used in radiotherapy guidance 
   Cornel Zachiu, Baudouin Denis de Senneville, Bas W. Raaymakers, Mario Ries 
   Physics in Medicine and Biology, 2020, ⟨10.1088/1361-6560/ab501d⟩
Liver contrast-enhanced sonography: Computer-assisted differentiation between focal nodular hyperplasia and inflammatory hepatocellular adenoma by reference to microbubble transport patterns 
   Baudouin Denis de Senneville, Nora Frulio, Hervé Laumonier, Cécile Salut, Luc Lafitte, Hervé Trillaud 
   European Radiology, 2020, ⟨10.1007/s00330-019-06566-1⟩
Patch-based field-of-view matching in multi-modal images for electroporation-based ablations 
   Luc Lafitte, Rémi Giraud, Cornel Zachiu, Mario Ries, Olivier Sutter, Antoine Petit, Olivier Seror, Clair Poignard, Baudouin Denis de Senneville 
   Computerized Medical Imaging and Graphics, 2020, 84, ⟨10.1016/j.compmedimag.2020.101750⟩
Differential annualized rates of hippocampal subfields atrophy in aging and future Alzheimer’s clinical syndrome 
   Louis Nadal, Pierrick Coupé, Catherine Helmer, José V. Manjón, Hélène Amieva, François Tison, Jean-François Dartigues, Gwenaelle Catheline, Vincent Planche 
   Neurobiology of Aging, In press, ⟨10.1016/j.neurobiolaging.2020.01.011⟩
pBrain: A novel pipeline for Parkinson related brain structure segmentation 
   José V. Manjón, Alexa Bertó, José E. Romero, Enrique Lanuza, Roberto Vivo-Hernando, Fernando Aparici-Robles, Pierrick Coupé 
   Neuroimage-Clinical, 2020, 25, pp.102184. ⟨10.1016/j.nicl.2020.102184⟩
RegQCNET: Deep quality control for image-to-template brain MRI affine registration 
   Baudouin Denis de Senneville, Jose V. Manjon, Pierrick Coupé 
   Physics in Medicine and Biology, 2020, ⟨10.1088/1361-6560/abb6be⟩
A proper generalized decomposition approach for optical flow estimation 
   Abdallah El Hamidi, Marwan Saleh, Nicolas Papadakis, Baudouin Denis de Senneville 
   Mathematical Methods in the Applied Sciences, 2020, 43 (8), pp.5339-5356. ⟨10.1002/mma.6275⟩
Blind MRI Brain Lesion Inpainting Using Deep Learning 
   José V Manjón, José E Romero, Roberto Vivo-Hernando, Gregorio Rubio, Fernando Aparici, Maria de La Iglesia-Vaya, Thomas Tourdias, Pierrick Coupé 
   International Workshop on Simulation and Synthesis in Medical Imaging, Oct 2020, LIMA, Peru. pp.41-49, ⟨10.1007/978-3-030-59520-3_5⟩
Tensor-based grading: a novel patch-based grading approach for the analysis of deformation fields in Huntington’s disease 
   Kilian Hett, Hans Johnson, Pierrick Coupé, Jane Paulsen, Jeffrey D Long, Ipek Oguz 
   IEEE ISBI 2020: International Symposium on Biomedical Imaging, Apr 2020, Iowa City, United States
Patch-Based Abnormality Maps for Improved Deep Learning-Based Classification of Huntington’s Disease 
   Kilian Hett, Rémi Giraud, Hans Johnson, Jane Paulsen, Jeffrey Long, Ipek Oguz 
   Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, Oct 2020, Lima, Peru. pp.636-645, ⟨10.1007/978-3-030-59728-3_62⟩
2019
LIFESPAN CHANGES OF THE HUMAN BRAIN IN ALZHEIMER’S DISEASE 
   Pierrick Coupé, Jose Vicente Manjon, Enrique Lanuza, Gwenaelle Catheline 
   Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-39809-8⟩
Optimizing 4D abdominal MRI: image denoising using an iterative back-projection approach 
   Baudouin Denis de Senneville, Colleen Rosalie Cardiet, Aurélien Trotier, Emeline Ribot, Luc Lafitte, Laurent Facq, Sylvain Miraux 
   Physics in Medicine and Biology, In press, ⟨10.1088/1361-6560/ab563e⟩
Cerebellar parcellation in schizophrenia and bipolar disorder 
   C. Laidi, T. Hajek, F. Spaniel, M. Kolenic, M.‐a. d’Albis, S. Sarrazin, J.‐f. Mangin, Edouard Duchesnay, P. Brambilla, M. Wessa, J. Linke, M. Polosan, P. Favre, A. Versace, M. Phillips, J. Manjon, José Romero, F. Hozer, M. Leboyer, Pierrick Coupé, J. Houenou 
   Acta Psychiatrica Scandinavica, 2019, 140 (5), pp.468-476. ⟨10.1111/acps.13087⟩
Multimodal Hippocampal Subfield Grading For Alzheimer’s Disease Classification 
   Kilian Hett, Vinh-Thong Ta, Gwenaelle Catheline, Thomas Tourdias, José V. Manjón, Pierrick Coupé 
   Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-49970-9⟩
Evaluating the benefit of PBS vs. VMAT dose distributions in terms of dosimetric sparing and robustness against inter-fraction anatomical changes for pediatric abdominal tumors 
   Filipa Guerreiro, Cornel Zachiu, Enrica Seravalli, Ribeiro Cassia Oraboni, Geert Janssens, Mario Ries, Baudouin Denis de Senneville, John H Maduro, Charlotte L Brouwer, Erik W Korevaar, Antje C Knopf, Bas W. Raaymakers 
   Radiotherapy & Oncology, 2019, ⟨10.1016/j.radonc.2019.06.025⟩
T2-based MRI Delta-Radiomics Improve Response Prediction in Soft-Tissue Sarcomas Treated by Neoadjuvant Chemotherapy 
   Amandine Crombé, Cynthia Perier, Michèle Kind, Baudouin Denis de Senneville, Francois Le Loarer, Antoine Italiano, Xavier Buy, Olivier Saut 
   Journal of Magnetic Resonance Imaging, 2019, 50 (2), pp.497-510. ⟨10.1002/jmri.26589⟩
Evolution of brain atrophy subtypes during aging predicts long-term cognitive decline and future Alzheimer’s clinical syndrome 
   Vincent V Planche, Pierrick Coupé, Catherine Helmer, Mélanie Le Goff, Hélène Amieva, François Tison, Jean-François Dartigues, Gwenaelle Catheline 
   Neurobiology of Aging, 2019, 79, pp.22-29. ⟨10.1016/j.neurobiolaging.2019.03.006⟩
STRUCTURAL CONNECTIVITY MAPPING IN THE HUMAN HIPPOCAMPAL SUBFIELDS USING SUPER-RESOLUTION HYDI 
   Nahla M.H. Elsaid, Pierrick Coupé, Andrew Saykin, Yu-Chien Wu 
   Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring, 2019, 15 (7), pp.P741-P742. ⟨10.1016/j.jalz.2019.06.2775⟩
Influence of Different Isoflurane Anesthesia Protocols on Murine Cerebral Hemodynamics measured with pseudo-Continuous Arterial Spin Labeling 
   Leon P Munting, Marc Derieppe, Ernst Suidgeest, Baudouin Denis de Senneville, Jack A Wells, Louise van Der Weerd 
   NMR in Biomedicine, 2019, ⟨10.1002/nbm.4105⟩
Assessment of Intratumoral Doxorubicin Penetration after Mild Hyperthermia-mediated Release from Thermosensitive Liposomes 
   Marc Derieppe, Jean-Michel Escoffre, Baudouin Denis de Senneville, Quincy van Houtum, Angelique Barten-van Rijbroek, Kim van Der Wurff-Jacobs, Ludwig Dubois, Clemens Bos, Chrit T. W. Moonen 
   Contrast Media and Molecular Imaging, 2019, ⟨10.1155/2019/2645928⟩
A planning strategy for combined self-scanned/gated MR- HIFU treatment in the pancreas 
   Cyril Jacques J Ferrer, Clemens Bos, Baudouin Denis de Senneville, Pim T S Borman, Bjorn Stemkens, Rob H N Tijssen, Chrit T. W. Moonen, Lambertus W Bartels 
   International Journal of Hyperthermia, 2019
Numerical Workflow of Irreversible Electroporation for Deep-Seated Tumor 
   Olivier Gallinato, Baudouin Denis de Senneville, Olivier Seror, Clair Poignard 
   Physics in Medicine and Biology, 2019, 64 (5), pp.055016. ⟨10.1088/1361-6560/ab00c4⟩
AssemblyNet: A Novel Deep Decision-Making Process for Whole Brain MRI Segmentation 
   Pierrick Coupé, Boris Mansencal, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville, Vinh-Thong Ta, Vincent Lepetit, José V Manjón 
   International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Oct 2019, Shenzhen, China. pp.466-474, ⟨10.1007/978-3-030-32248-9_52⟩
No Structural Differences Are Revealed by VBM in ‘de novo’ Parkinsonian Patients 
   Verónica Muñoz Ramírez, Florence Forbes, Pierrick Coupé, Michel Dojat 
   MEDINFO 2019 - 17th World Congress On Medical And Health Informatics, Aug 2019, Lyon, France. pp.268-272, ⟨10.3233/SHTI190225⟩
No structural Brain differences in ‘de novo’ Parkinsonian patients 
   Verónica Muñoz Ramírez, Florence Forbes, Pierrick Coupé, Michel Dojat 
   OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1-5
Diffusion magnetic resonance imaging in the human hippocampal subfields using super-resolution HYDI 
   Nahla Elsaid, Pierrick Coupé, Yu-Chien Wu 
   ISMRM, May 2019, Montréal, Canada
Hepatic tumor diagnosis by analysing dense transport fields in contrast-enhanced ultrasound 
   Baudouin Denis de Senneville, Nora Frulio, Hervé Laumonier, Cécile Salut, Luc Lafitte, Hervé Trillaud 
   ISBI19 - 16th IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy
2018
Accelerating multi-modal image registration using a supervoxel-based variational framework 
   L Lafitte, Cornel Zachiu, Linda Kerkmeijer, Mario Ries, Baudouin Denis de Senneville 
   Physics in Medicine and Biology, 2018, 63 (23), pp.235009
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images 
   Aaron Carass, Jennifer Cuzzocreo, Shuo Han, Carlos Hernandez-Castillo, Paul Rasser, Melanie Ganz, Vincent Beliveau, Jose Dolz, Ismail Ben Ayed, Christian Desrosiers, Benjamin Thyreau, José E. Romero, Pierrick Coupé, Jose V. Manjon, Vladimir Fonov, D. Louis Collins, Sarah Ying, Chiadi Onyike, Deana Crocetti, Bennett Landman, Stewart Mostofsky, Paul M. Thompson, Jerry Prince 
   NeuroImage, 2018, 183, pp.150 - 172. ⟨10.1016/j.neuroimage.2018.08.003⟩
Longitudinal study of functional brain network reorganization in clinically isolated syndrome 
   Ismail Koubiyr, Mathilde Deloire, Pierre Besson, Pierrick Coupé, Cécile Dulau, Jean Pelletier, Thomas Tourdias, Bertrand Audoin, Bruno Brochet, Jean-Philippe Ranjeva, Aurélie Ruet 
   Multiple Sclerosis Journal, 2018, 26 (2), pp.135245851881310. ⟨10.1177/1352458518813108⟩
Antipsychotic and benzodiazepine use and brain morphology in schizophrenia and affective psychoses – Systematic reviews and birth cohort study 
   Sanna Huhtaniska, Iikka Korkala, Tuomas Heikka, Lassi Björnholm, Heli Lehtiniemi, Anja Hulkko, Jani Moilanen, Jussi Tohka, Jose V. Manjon, Pierrick Coupé, Vesa Kiviniemi, Matti Isohanni, Hannu Koponen, Graham Murray, Jouko Miettunen, Erika Jääskeläinen 
   Psychiatry Research: Neuroimaging, 2018, 281, pp.43 - 52. ⟨10.1016/j.pscychresns.2018.08.015⟩
Differential Gray Matter Vulnerability in the 1 Year Following a Clinically Isolated Syndrome 
   Ismail Koubiyr, Mathilde Deloire, Pierrick Coupé, Cécile Dulau, Pierre Besson, Amandine Moroso, Vincent Planche, Thomas Tourdias, Bruno Brochet, Aurélie Ruet 
   Frontiers in Neurology, 2018, 9, ⟨10.3389/fneur.2018.00824⟩
Adaptive fusion of texture-based grading for Alzheimer’s disease classification 
   Kilian Hett, Vinh-Thong Ta, José V Manjón, Pierrick Coupé 
   Computerized Medical Imaging and Graphics, In press
Anatomically plausible models and quality assurance criteria for online mono- and multi-modal medical image registration 
   Cornel Zachiu, B Denis de Senneville, Chrit T W Moonen, Bas Raaymakers, Mario Ries 
   Physics in Medicine and Biology, 2018, 63 (15), pp.155016
Pre-treatment magnetic resonance-based texture features as potential imaging biomarkers for predicting event free survival in anal cancer treated by chemoradiotherapy 
   Arnaud Hocquelet, Thibaut Auriac, Cynthia Perier, Clarisse Dromain, Marie Meyer, Jean-Baptiste Pinaquy, Alban Denys, Hervé Trillaud, Baudouin Denis de Senneville, Véronique Vendrely 
   European Radiology, 2018, 28 (7), pp.2801-2811. ⟨10.1007/s00330-017-5284-z⟩
Real-time 3D ultrasound based motion tracking for the treatment of mobile organs with MR-guided high-intensity focused ultrasound 
   Pierre Bour, Valéry Ozenne, Fabrice Marquet, Baudouin Denis de Senneville, Erik Dumont, Bruno Quesson 
   International Journal of Hyperthermia, 2018, 34 (8), pp.1225-1235
Fluid filling of the digestive tract for improved proton resonance frequency shift-based MR thermometry in the pancreas 
   Cyril Jacques Ferrer, Lambertus Bartels, Marijn van Stralen, Baudouin Denis de Senneville, Chrit T.W. Moonen, Clemens Bos 
   Journal of Magnetic Resonance Imaging, 2018, 47 (3), pp.692-701
Respiratory motion model based on the noise covariance matrix of a receive array 
   Anna Andreychenko, Baudouin Denis de Senneville, Robin Navest, Rob H.N. Tijssen, Jan J.W. Lagendijk, Cornelis van den Berg 
   Magnetic Resonance in Medicine, 2018, 79 (3), pp.1730-1735
Development of a Fluid Dynamic Model for Quantitative Contrast-Enhanced Ultrasound Imaging 
   Baudouin Denis de Senneville, Anthony Novell, Chloé J. Arthuis, Vanda Mendes, Paul-Armand Dujardin, Frédéric Patat, Ayache Bouakaz, Jean-Michel Escoffre, Franck Perrotin 
   IEEE Transactions on Medical Imaging, 2018, 37 (2), pp.372-383
Regional hippocampal vulnerability in early multiple sclerosis: Dynamic pathological spreading from dentate gyrus to CA1 
   Vincent V Planche, Ismail Koubiyr, José E. Romero, José V. Manjon, Pierrick Coupé, Mathilde Deloire, Vincent Dousset, Bruno Brochet, Aurélie Ruet, Thomas Tourdias 
   Human Brain Mapping, 2018, 39 (4), pp.1814-1824. ⟨10.1002/hbm.23970⟩
Non-rigid CT/CBCT to CBCT registration for online external beam radiotherapy guidance 
   Cornel Zachiu, Baudouin Denis de Senneville, Rob Tijssen, Alexis Kotte, Antonetta Houweling, Linda Kerkmeijer, Jan Lagendijk, Chrit Moonen, Mario Ries 
   Physics in Medicine and Biology, In press
MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting 
   José V. Manjón, Pierrick Coupé, Parnesh Raniga, Ying Xia, Patricia Desmond, Jurgen Fripp, Olivier Salvado 
   Computerized Medical Imaging and Graphics, In press, ⟨10.1016/j.compmedimag.2018.05.001⟩
A fluid dynamic model for quantitative contrast-enhanced ultrasound imaging: validation for the assessment of uteroplacental perfusion 
   Baudouin Denis de Senneville, Anthony Novell, Chloé J. Arthuis, Vanda Mendes, Paul-Armand Dujardin, Frédéric Patat, Ayache Bouakaz, Jean-Michel Escoffre, Franck Perrotin 
   IEEE International Ultrasonics Symposium, Oct 2018, Kobe, Japan
Graph of brain structures grading for early detection of Alzheimer’s disease 
   Kilian Hett, Vinh-Thong Ta, Jose Vicente Manjon, Pierrick Coupé 
   Medical Image Computing and Computer-Assisted Intervention (MICCAI), Sep 2018, GRANADA, Spain
Graph of hippocampal subfields grading for Alzheimer’s disease prediction 
   Kilian Hett, Vinh-Thong Ta, José V Manjón, Pierrick Coupé 
   Machine Learning in Medical Imaging (MICCAI), Sep 2018, Granada, Spain
MRI Denoising Using Deep Learning 
   Jose V. Manjon, Pierrick Coupé 
   International Workshop on Patch-based Techniques in Medical Imaging (MICCAI), Sep 2018, Granada, Spain. pp.12 - 19, ⟨10.1007/978-3-030-00500-9_2⟩
LesionBrain: An Online Tool for White Matter Lesion Segmentation 
   Pierrick Coupé, Thomas Tourdias, Pierre Linck, Jose V Romero, Jose V. Manjon 
   International Workshop on Patch-based Techniques in Medical Imaging (MICCAI), Sep 2018, Grenade, Spain. pp.95 - 103, ⟨10.1007/978-3-030-00500-9_11⟩
Non-rigid CT to MR registration for online external beam radiotherapy guidance 
   Cornel Zachiu, Baudouin Denis de Senneville, Mario Ries, Fieke Prins, Bas W. Raaymakers 
   6th MR in RT symposium, Jun 2018, Utrecht, Netherlands
Evaluation of 2D simultaneous multi-slice EPI at 1.5T for MR-thermometry in presence of motion 
   Pierre Bour, Valéry Ozenne, Fabrice Marquet, Baudouin Denis de Senneville, Erik Dumont, Bruno Quesson 
   International Society of Magnetic Resonance in Medicine, Jun 2018, Paris, France
3D ultrasound based motion tracking combined with rapid multislice MR-thermometry for MR guided HIFU on mobile organs 
   Valéry Ozenne, Pierre Bour, Baudouin Denis de Senneville, Marylène Delcey, Wadie Ben Hassen, Alexis Vaussy, S Rainer, Bruno Quesson 
   International Society of Magnetic Resonance in Medicine, Jun 2018, Paris, France
Analysis of Contrast-Enhanced Ultrasound using fluid dynamic 
   Baudouin Denis de Senneville, Anthony Novell, Chloé J. Arthuis, Vanda Mendes, Paul-Armand Dujardin, Frédéric Patat, Ayache Bouakaz, Jean-Michel Escoffre, Franck Perrotin 
   IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2018, Washington, United States
Patch-based MRI Analysis: From voxel to knowledge 
   Pierrick Coupé 
   Medical Imaging. Université de Bordeaux, 2018
2017
HIPS: A new hippocampus subfield segmentation method 
   José E. Romero, Pierrick Coupé, José V. Manjón 
   NeuroImage, 2017, 163, pp.286 - 295. ⟨10.1016/j.neuroimage.2017.09.049⟩
Real-time non-rigid target tracking for ultrasound-guided clinical interventions 
   Cornel Zachiu, Mario Ries, Pascal Ramaekers, Jean-Luc Guey, Chrit T. W. Moonen, Baudouin Denis de Senneville 
   Physics in Medicine and Biology, 2017, 62 (20), pp.8154 - 8177. ⟨10.1088/1361-6560/aa8c66⟩
Microstructural analyses of the posterior cerebellar lobules in relapsing-onset multiple sclerosis and their implication in cognitive impairment 
   Amandine Moroso, Aurélie Ruet, Delphine Lamargue-Hamel, Fanny Munsch, Mathilde Deloire, Pierrick Coupé, Julie Charré-Morin, Aurore Saubusse, Jean-Christophe Ouallet, Vincent Planche, Thomas Tourdias, Vincent Dousset, Bruno Brochet 
   PLoS ONE, 2017, 12 (8), ⟨10.1371/journal.pone.0182479⟩
Long-term antipsychotic and benzodiazepine use and brain volume changes in schizophrenia: The Northern Finland Birth Cohort 1966 study 
   Sanna Huhtaniska, Erika Jääskeläinen, Tuomas Heikka, Jani Moilanen, Heli Lehtiniemi, Jussi Tohka, Jose V. Manjon, Pierrick Coupé, Lassi Björnholm, Hannu Koponen, Juha Veijola, Matti Isohanni, Vesa Kiviniemi, Graham Murray, Jouko Miettunen 
   Psychiatry Research: Neuroimaging, 2017, 266, pp.73 - 82. ⟨10.1016/j.pscychresns.2017.05.009⟩
Towards a unified analysis of brain maturation and aging across the entire lifespan: A MRI analysis 
   Pierrick Coupé, Gwenaelle Catheline, Enrique Lanuza, José Vicente Manjón 
   Human Brain Mapping, 2017
A novel adaptive needle insertion sequencing for robotic, single needle MR-guided high-dose-rate prostate brachytherapy 
   Maxence Borot de Battisti, Baudouin Denis de Senneville, Gilion Hautvast, D Binnekamp, Jan Lagendijk, M Maenhout, M Moerland 
   Physics in Medicine and Biology, 2017
Combination of principal component analysis and optical-flow motion compensation for improved cardiac MR thermometry 
   Solenne Toupin, Baudouin Denis de Senneville, Valery Ozenne, Pierre Bour, Matthieu Lepetit-Coiffe, M Boissenin, Pierre Jais, Bruno Quesson 
   Physics in Medicine and Biology, 2017, 62 (4), pp.1208-1224
Feasibility of real-time MR thermal dose mapping for predicting radiofrequency ablation outcome in the myocardium in vivo 
   Solenne Toupin, Pierre Bour, Matthieu Lepetit-Coiffe, Valery Ozenne, Baudouin Denis de Senneville, Rainer Schneider, Alexis Vaussy, Arnaud Chaumeil, Hubert Cochet, Frédéric Sacher, Pierre Jais, Bruno Quesson 
   Journal of Cardiovascular Magnetic Resonance, 2017, 19 (1), pp.14
An Adaptive Non-Local-Means Filter for Real-Time MR-Thermometry 
   Cornel Zachiu, Mario Ries, Chrit Moonen, Baudouin Denis de Senneville 
   IEEE Transactions on Medical Imaging, 2017, 36 (4), pp.904-916. ⟨10.1109/TMI.2016.2627221⟩
SuperPatchMatch: an Algorithm for Robust Correspondences using Superpixel Patches 
   Rémi Giraud, Vinh-Thong Ta, Aurélie Bugeau, Pierrick Coupé, Nicolas Papadakis 
   IEEE Transactions on Image Processing, 2017, ⟨10.1109/TIP.2017.2708504⟩
A framework for continuous target tracking during MR-guided high intensity focused ultrasound thermal ablations in the abdomen 
   Cornel Zachiu, Baudouin Denis de Senneville, Ivan D. Dmitriev, Chrit T. W. Moonen, Mario Ries 
   Journal of Therapeutic Ultrasound, 2017, 5, pp.27. ⟨10.1186/s40349-017-0106-y⟩
A comparison of accurate automatic hippocampal segmentation methods 
   Azar Zandifar, Vladimir Fonov, Pierrick Coupé, Jens Pruessner, D Louis Collins 
   NeuroImage, 2017, ⟨10.1016/j.neuroimage.2017.04.018⟩
Effect of intra-fraction motion on the accumulated dose for free-breathing MR-guided stereotactic body radiation therapy of renal-cell carcinoma 
   Bjorn Stemkens, Markus Glitzner, Charis Kontaxis, Baudouin Denis de Senneville, Fieke Prins, Sjoerd Crijns, Linda Kerkmeijer, Jan Lagendijk, C. van den Berg, Rob Tijssen 
   Physics in Medicine and Biology, 2017
Microstructural alterations precede subcortical deep grey matter volume loss in patients with clinically isolated syndrome 
   Ismail Koubiyr, Mathilde S. A. Deloire, Julie Charré-Morin, Aurore Saubusse, Pierrick Coupé, Cécile Dulau, Thomas Tourdias, Pierre Besson, J.P. Ranjeva, Jean Pelletier, Bertrand Audoin, B Brochet, Aurélie Ruet 
   ECTRIMS, Oct 2017, Paris, France
Relationships between reorganization of functional brain network topology and cognition in clinically isolated syndrome: A 1 year Resting-state fMRI longitudinal study 
   Ismail Koubiyr, Mathilde S. A. Deloire, Julie Charré-Morin, Aurore Saubusse, Pierrick Coupé, Cécile Dulau, Thomas Tourdias, Jean-Philippe Ranjeva, Jean Pelletier, Bertrand Audoin, Bruno Brochet, Aurélie Ruet 
   ECTRIMS, Oct 2017, Paris, France
Adaptive fusion of texture-based grading: Application to Alzheimer’s disease detection 
   Kilian Hett, Vinh-Thong Ta, José V Manjón, Pierrick Coupé 
   PatchMI: 3rd International Workshop on Patch-based Techniques in Medical Imaging, Sep 2017, Quebec, Canada
Hippocampus Subfield Segmentation Using a Patch-Based Boosted Ensemble of Autocontext Neural Networks 
   José V Manjón, Pierrick Coupé 
   International Workshop on Patch-based Techniques in Medical Imaging (MICCAI), Sep 2017, Québec, Canada. ⟨10.1007/978-3-319-67434-6_4⟩
Early Prediction of Alzheimer’s Disease with Non-local Patch-Based Longitudinal Descriptors 
   Gerard Sanroma, Víctor Andrea, Oualid M Benkarim, José V Manjón, Pierrick Coupé, Oscar Camara, Gemma Piella, Miguel A González Ballester 
   International Workshop on Patch-based Techniques in Medical Imaging (MICCAI), Sep 2017, Québec, Canada. ⟨10.1007/978-3-319-67434-6_9⟩
Accuracy of MRI classification algorithms in a tertiary memory center clinical routine cohort 
   Alexandre Morin, Jorge Samper-Gonzales, Anne Bertrand, Enrica Cavedo, Simone Lista, Didier Dormont, Aline Mendes, Pierrick Coupé, Jamila Ahdidan, Marcel Levy, Agnès Michon, Dalila Samri, Marc Teichmann, Harald Hampel, Bruno Dubois, Stéphane Epelbaum, Olivier Colliot 
   AAIC 2017 - Alzheimer’s Association International Conference, Jul 2017, London, United Kingdom. pp.P772-P774, ⟨10.1016/j.jalz.2017.06.1034⟩
Evaluation of cardiac magnetic resonance thermometry in patients 
   Valery Ozenne, Solenn Toupin, Pierre Bour, Baudouin Denis de Senneville, Alexis Vaussy, Matthieu Lepetit-Coiffé, Pierre Jaïs, Hubert Cochet, Bruno Quesson 
   Heart Rhythm 2017, May 2017, Chicago, United States
Evaluation of cardiac magnetic resonance thermometry in patients 
   Valery Ozenne, Solenn Toupin, Pierre Bour, Baudouin Denis de Senneville, Alexis Vaussy, Matthieu Lepetit-Coiffé, Pierre Jaïs, Hubert Cochet, Bruno Quesson 
   International Society of Magnetic Resonance in Medicine 2017, Apr 2017, Honolulu, United States
2016
Real-time auto-adaptive margin generation for MLC-tracked radiotherapy 
   Markus Glitzner, M Fast, Baudouin Denis de Senneville, S. Nill, U. Oelfke, Jan Lagendijk, Bas Raaymakers, Sjoerd Crijns 
   Physics in Medicine and Biology, 2016, 62 (1), pp.186-201
Magnetic resonance texture parameters are associated with ablation efficiency in MR-guided high-intensity focussed ultrasound treatment of uterine fibroids 
   Arnaud Hocquelet, Baudouin Denis de Senneville, Nora Frulio, C. Salut, Mounir Bouzgarrou, Panteleimon Papadopoulos, Hervé Trillaud 
   International Journal of Hyperthermia, 2016
Posterior lobules of the cerebellum and information processing speed at various stages of multiple sclerosis 
   Amandine Moroso, Aurélie Ruet, Delphine Lamargue-Hamel, Fanny Munsch, Mathilde Deloire, Pierrick Coupé, Jean-Christophe Ouallet, Vincent Planche, Nicolas Moscufo, Dominik S Meier, Thomas Tourdias, Charles R G Guttmann, Vincent Dousset, Bruno Brochet 
   Journal of Neurology, Neurosurgery and Psychiatry, 2016, ⟨10.1136/jnnp-2016-313867⟩
EVolution: an Edge-based Variational method for non-rigid multi-modal image registration 
   Baudouin Denis de Senneville, Cornel Zachiu, Mario Ries, Chrit Moonen 
   Physics in Medicine and Biology, 2016, 61 (20), pp.7377-7396. ⟨10.1088/0031-9155/61/20/7377⟩
Image-driven, model-based 3D abdominal motion estimation for MR-guided radiotherapy 
   Bjorn Stemkens, Rob Tijssen, Baudouin Denis de Senneville, Jan Lagendijk, C. van den Berg 
   Physics in Medicine and Biology, 2016, 61 (14)
FBG-based sensing for real-time needle tracking during MR-guided brachytherapy 
   Maxence Borot de Battisti, Baudouin Denis de Senneville, M Maenhout, Gilion Hautvast, D Binnekamp, Jan Lagendijk, Marco van Vulpen, M Moerland 
   Medical Physics, 2016
Adaptive planning strategy for HDR prostate brachytherapy - a simulation study on needle positioning errors 
   Maxence Borot de Battisti, Baudouin Denis de Senneville, M Maenhout, Gilion Hautvast, D Binnekamp, Jan Lagendijk, Marco van Vulpen, M Moerland 
   Physics in Medicine and Biology, 2016
Improved Cardiac Magnetic Resonance-Thermometry and dosimetry for monitoring lesion formation during catheter ablation 
   Valéry Ozenne, Solenne Toupin, Pierre Bour, Baudouin Denis de Senneville, Matthieu Lepetit-Coiffé, M Boissenin, Jenny Benois-Pineau, Michael Hansen, Souheil Inati, Assaf Govari, Pierre Jais, Bruno Quesson 
   Magnetic Resonance in Medicine, 2016
MRI monitoring of nanocarrier accumulation and release using Gadolinium-SPIO co-labelled thermosensitive liposomes 
   Cyril Lorenzato, Chris Oerlemans, M. van Elk, W. Geerts, Baudouin Denis de Senneville, Chrit Moonen, Clemens Bos 
   Contrast Media and Molecular Imaging, 2016
Non Local Spatial and Angular Matching : Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising 
   Samuel St-Jean, Pierrick Coupé, Maxime Descoteaux 
   Medical Image Analysis, 2016, ⟨10.1016/j.media.2016.02.010⟩
Hippocampal microstructural damage correlates with memory impairment in clinically isolated syndrome suggestive of multiple sclerosis 
   Vincent V Planche, Aurélie Ruet, Pierrick S Coupé, Delphine Lamargue-Hamel, Mathilde Deloire, Bruno Pereira, José S Manjon, Fanny Munsch, Nicola Moscufo, Dominik S Meier, Charles R G Guttmann, Vincent V Dousset, Bruno Brochet, Thomas Tourdias 
   Multiple Sclerosis Journal, 2016, 33, pp.1596 - 1596. ⟨10.1177/1352458514567727⟩
Early Fiber Number Ratio Is a Surrogate of Corticospinal Tract Integrity and Predicts Motor Recovery After Stroke 
   Antoine Bigourdan, Fanny Munsch, Pierrick Coupé, Charles R. G. Guttmann, Sharmila Sagnier, Pauline Renou, Sabrina Debruxelles, Mathilde Poli, Vincent Dousset, Igor Sibon, Thomas Tourdias 
   Stroke, 2016, ⟨10.1161/STROKEAHA.115.011576⟩
CERES: A new cerebellum lobule segmentation method 
   Jose E Romero, Pierrick Coupé, Rémi Giraud, Vinh-Thong Ta, Vladimir S Fonov, Min Tae Park, Mallar M Chakravarty, Aristotle N Voineskos, Jose V Manjón 
   NeuroImage, 2016, ⟨10.1016/j.neuroimage.2016.11.003⟩
Automatic thalamus and hippocampus segmentation from MP2RAGE: comparison of publicly available methods and implications for DTI quantification 
   Erhard Næss-Schmidt, Anna Tietze, Jakob Udby Blicher, Mikkel Petersen, Irene K. Mikkelsen, Pierrick Coupé, José V. Manjón, Simon Fristed Eskildsen 
   International Journal of Computer Assisted Radiology and Surgery, 2016, ⟨10.1007/s11548-016-1433-0⟩
Three-Dimensional Measurement Of hepatocellular carcinoma Ablation Zones And Margins For Predicting Local Tumor Progression 
   Arnaud Hocquelet, Hervé Trillaud, Nora Frulio, Panteleimon Papadopoulos, P. Balageas, C. Salut, Marie Meyer, Jean-Frédéric Blanc, Michel Montaudon, Baudouin Denis de Senneville 
   JVIR: Journal of Vascular and Interventional Radiology, 2016, 27 (7), pp.1038-1045.e2. ⟨10.1016/j.jvir.2016.02.031⟩
An Optimized PatchMatch for multi-scale and multi-feature label fusion 
   Rémi Giraud, Vinh-Thong Ta, Nicolas Papadakis, Jose Vicente Manjon, D Louis Collins, Pierrick Coupé 
   NeuroImage, 2016, 124, pp.770-782. ⟨10.1016/j.neuroimage.2015.07.076⟩
Optic Radiations Microstructural Changes in Glaucoma and Association With Severity: A Study Using 3Tesla-Magnetic Resonance Diffusion Tensor Imaging 
   Laury Tellouck, Muriel Durieux, Pierrick Coupé, Audrey Cougnard-Grégoire, Joy Tellouck, Thomas Tourdias, Fanny Munsch, Arnaud Garrigues, Catherine Helmer, Florence Malet, Jean-François Dartigues, Vincent Dousset, Cecile Delcourt, Cédric Schweitzer 
   Investigative Ophthalmology & Visual Science, 2016, 57, pp.6539 - 6539. ⟨10.1167/iovs.16-19838⟩
Sparse-Based Morphometry: Principle and Application to Alzheimer’s Disease 
   Pierrick Coupé, Charles Deledalle, Charles H Dossal, Michèle Allard 
   Patch-Based Techniques in Medical Imaging (MICCAI), Oct 2016, Athènes, Greece. ⟨10.1007/978-3-319-47118-1_6⟩
HIST: HyperIntensity Segmentation Tool 
   Jose V Manjón, Pierrick Coupé, Parnesh Raniga, Ying Xia, Jurgen Fripp, Olivier Salvado 
   Patch-Based Techniques in Medical Imaging (MICCAI), Oct 2016, Athènes, Greece. pp.92 - 99, ⟨10.1007/978-3-319-47118-1_12⟩
Non-local MRI Library-Based Super-Resolution: Application to Hippocampus Subfield Segmentation 
   Jose V Romero, Pierrick Coupé, Jose V Manjón 
   Patch-Based Techniques in Medical Imaging (MICCAI), Oct 2016, Athènes, Greece. pp.68 - 75, ⟨10.1007/978-3-319-47118-1_9⟩
Patch-based DTI grading: Application to Alzheimer’s disease classication 
   Kilian Hett, Vinh-Thong Ta, Rémi Giraud, Mary Mondino, José V Manjón, Pierrick Coupé 
   Second International Workshop, Patch-MI 2016, Held in Conjunction with MICCAI 2016, Oct 2016, Athens, Greece
High Resolution Hippocampus Subfield Segmentation Using Multispectral Multiatlas Patch-Based Label Fusion 
   José V Romero, Pierrick Coupe, José V Manjón 
   Patch-Based Techniques in Medical Imaging (MICCAI), Oct 2016, Athènes, Greece. pp.117 - 124, ⟨10.1007/978-3-319-47118-1_15⟩
First clinical evaluation of real-time cardiac MR thermometry 
   Valéry Ozenne Ozenne, Solenne Toupin, Pierre Bour, Baudouin Denis de Senneville, Alexis Vaussy, Matthieu Lepetit-Coiffé, Pierre Jais, Hubert Cochet, Bruno Quesson 
   International Society of Magnetic Resonance in Medicine, May 2016, Singapour, Singapore
An improved tracking technique for real-time MR-guided beam therapies in moving organs 
   Cornel Zachiu, Mario Ries, Chrit Moonen, Baudouin Denis de Senneville 
   International Society of Magnetic Resonance in Medicine, May 2016, Singapour, Singapore
ASSESSMENT OF DOXORUBICIN PENETRATION IN THE TUMOR MICROENVIRONMENT AFTER RELEASE FROM THERMOSENSITIVE LIPOSOMES DURING MILD HYPERTHERMIA 
   M Derieppe, Baudouin Denis de Senneville, J.-M Escoffre, Q van Houtum, A Barten van Rijbroek, C Bos, C Moonen 
   IEEE International Symposium on Biomedical Imaging (ISBI), May 2016, Prague, France
Evaluation of common proton resonance frequency shift based MR Thermometry methods in the pancreas 
   Cyril Jacques Ferrer, Clemens Bos, M van Stralen, Baudouin Denis de Senneville, Chrit Moonen, H.W. Bartels 
   International Society of Magnetic Resonance in Medicine, May 2016, Singapour, Singapore
In-vivo echo-navigated MR thermometry for real-time monitoring of cardiac radiofrequency ablation 
   Solenne Toupin, Matthieu Lepetit-Coiffé, Pierre Bour, Valéry Ozenne, Baudouin Denis de Senneville, Rainer Schneider, K. Jenkins, Arnaud Chaumeil, Pierre Jais, Bruno Quesson 
   International Society of Magnetic Resonance in Medicine, May 2016, Singapour, Singapore
An improved optical flow tracking technique for real-time MR-guided beam therapies in moving organs 
   Cornel Zachiu, Nicolas Papadakis, Mario Ries, Chrit Moonen, Baudouin Denis de Senneville 
   IEEE International Symposium on Biomedical Imaging (ISBI’16), Apr 2016, Prague, Czech Republic
MRI guided HIFU methods for the ablation of liver and renal cancers 
   Baudouin Denis de Senneville, Chrit Moonen, Mario Ries 
   Therapeutic Ultrasound, Springer, pp.43-63, 2016
2015
Correction for Photobleaching in Dynamic Fluorescence Microscopy: Application in the Assessment of Pharmacokinetic Parameters in Ultrasound-Mediated Drug Delivery 
   Marc Derieppe, Clemens Bos, M. de Greef, Chrit Moonen, Baudouin Denis de Senneville 
   Physics in Medicine and Biology, 2015
Correction for Photobleaching in Dynamic Fluorescence Microscopy: Application in the Assessment of Pharmacokinetic Parameters in Ultrasound-Mediated Drug Delivery 
   Marc Derieppe, Clemens Bos, M. de Greef, Chrit Moonen, Baudouin Denis de Senneville 
   Physics in Medicine and Biology, 2015, 61 (2), pp.588
Non-Local Means Inpainting of MS Lesions in Longitudinal Image Processing 
   Nicolas Guizard, Kunio Nakamura, Pierrick Coupé, Vladimir S. Fonov, Douglas L. Arnold, D. Louis Collins 
   Frontiers in Aging Neuroscience, 2015, 9, ⟨10.3389/fnins.2015.00456⟩
An improved optical flow tracking technique for real-time MR-guided beam therapies in moving organs 
   Cornel Zachiu, Nicolas Papadakis, Mario Ries, Chrit Moonen, Baudouin Denis de Senneville 
   Physics in Medicine and Biology, 2015
Detection of Alzheimer’s disease signature in MR images seven years before conversion to dementia: Toward an early individual prognosis. 
   Pierrick Coupé, Vladimir S Fonov, Charlotte Bernard, Azar Zandifar, Simon F Eskildsen, Catherine Helmer, José V Manjón, Hélène Amieva, Jean-François Dartigues, Michèle Allard, Gwenaelle Catheline, D Louis Collins 
   Human Brain Mapping, 2015, ⟨10.1002/hbm.22926⟩
On-line 3D motion estimation using low resolution MRI 
   Markus Glitzner, Baudouin Denis de Senneville, Jan Lagendijk, Bas Raaymakers, Sjoerd Crijns 
   Physics in Medicine and Biology, 2015
An automated optimization tool for high-dose-rate (HDR) prostate brachytherapy with divergent needle pattern 
   Maxence Borot de Battisti, M Maenhout, Baudouin Denis de Senneville, Gilion Hautvast, D Binnekamp, Jan Lagendijk, Marco van Vulpen, M Moerland 
   Physics in Medicine and Biology, 2015, 60 (19), pp.7567-7583
Recruitment of endocytosis in sonopermeabilization-mediated drug delivery: a real-time study 
   Marc Derieppe, Katarzyna Rojek, Jean-Michel Escoffre, Baudouin Denis de Senneville, Chrit Moonen, Clemens Bos 
   Physical Biology, 2015, 12 (4), pp.046010. ⟨10.1088/1478-3975/12/4/046010⟩
Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge. 
   Esther E Bron, Marion Smits, Wiesje M van Der Flier, Hugo Vrenken, Frederik Barkhof, Philip Scheltens, Janne M Papma, Rebecca M E Steketee, Carolina Méndez Orellana, Rozanna Meijboom, Madalena Pinto, Joana R Meireles, Carolina Garrett, António J Bastos-Leite, Ahmed Abdulkadir, Olaf Ronneberger, Nicola Amoroso, Roberto Bellotti, David Cárdenas-Peña, Andrés M Álvarez-Meza, Chester V Dolph, Khan M Iftekharuddin, Simon F Eskildsen, Pierrick Coupé, Vladimir S Fonov, Katja Franke, Christian Gaser, Christian Ledig, Ricardo Guerrero, Tong Tong, Katherine R Gray, Elaheh Moradi, Jussi Tohka, Alexandre Routier, Stanley Durrleman, Alessia Sarica, Giuseppe Di Fatta, Francesco Sensi, Andrea Chincarini, Garry M Smith, Zhivko V Stoyanov, Lauge Sørensen, Mads Nielsen, Sabina Tangaro, Paolo Inglese, Christian Wachinger, Martin Reuter, John C van Swieten, Wiro J Niessen, Stefan Klein 
   NeuroImage, 2015, 111, pp.562-79. ⟨10.1016/j.neuroimage.2015.01.048⟩
MRI noise estimation and denoising using non-local PCA 
   José V. Manjón, Pierrick Coupé, Antonio Buades 
   Medical Image Analysis, 2015, 22 (1), pp.35-47. ⟨10.1016/j.media.2015.01.004⟩
Recruitment of endocytosis in sonopermeabilization-mediated drug delivery: A real-time study 
   Marc Derieppe, Katarzyna Rojek, Jean-Michel Escoffre, Baudouin Denis de Senneville, Chrit T. W. Moonen, Clemens Bos 
   Physical Biology, 2015
A direct PCA-based approach for real-time description of physiological organ deformations 
   Baudouin Denis de Senneville, Abdallah El Hamidi, Chrit Moonen 
   IEEE Transactions on Medical Imaging, 2015, 34 (4), pp.974-982. ⟨10.1109/TMI.2014.2371995⟩
A framework for the correction of slow physiological drifts during MR-guided HIFU therapies: Proof of concept 
   Cornel Zachiu, Baudouin Denis de Senneville, Chrit T. W. Moonen, Mario Ries 
   Medical Physics, 2015, 42 (7), pp.4137-4148
Performance analysis of a dedicated breast MR-HIFU system for tumor ablation in breast cancer patients 
   Roel Deckers, L Merckel, Baudouin Denis de Senneville, Gerald Schubert, Max Köhler, F Knuttel, W Mali, Chrit Moonen, M. van den Bosch, Lambertus Bartels 
   Physics in Medicine and Biology, 2015, 60 (14), pp.5527-5542
NABS: Non-local Automatic Brain Hemisphere Segmentation. 
   José E Romero, José V Manjón, Jussi Tohka, Pierrick Coupé, Montserrat Robles 
   Magnetic Resonance Imaging, 2015, In press. ⟨10.1016/j.mri.2015.02.005⟩
Edge-based multi-modal registration and application for night vision devices 
   Camille Sutour, Jean-François Aujol, Charles-Alban Deledalle, Baudouin Denis de Senneville 
   Journal of Mathematical Imaging and Vision, 2015, pp.1-20. ⟨10.1007/s10851-014-0554-8⟩
On-line MR imaging for dose validation of abdominal radiotherapy 
   Markus Glitzner, Sjoerd Crijns, Baudouin Denis de Senneville, Charis Kontaxis, Fieke Prins, Jan Lagendijk, Bas Raaymakers 
   Physics in Medicine and Biology, 2015
Rotation-invariant multi-contrast non-local means for MS lesion segmentation 
   Nicolas Guizard, Pierrick Coupé, Vladimir S. Fonov, Jose V. Manjón, Douglas L. Arnold, D. Louis Collins 
   Neuroimage-Clinical, 2015, 8, pp.376–389. ⟨10.1016/j.nicl.2015.05.001⟩
Optimizing 4-dimensional magnetic resonance imaging data sampling for respiratory motion analysis of pancreatic tumors 
   Bjorn Stemkens, Rob Tijssen, Baudouin Denis de Senneville, Hanne D Heerkens, Marco van Vulpen, Jan Lagendijk, C. van den Berg 
   International Journal of Radiation Oncology, Biology, Physics, 2015, 91 (3), pp.571-578. ⟨10.1016/j.ijrobp.2014.10.050⟩
On the Suitability of Elekta’s Agility 160 MLC for Tracked Radiation Delivery: Closed-loop Machine Performance 
   M Glitzner, S P M Crijns, Baudoin Denis de Senneville, J W Lagendijk, B W Raaymakers 
   Physics in Medicine and Biology, 2015, 60 (5), pp.2005-2017. ⟨10.1088/0031-9155/60/5/2005/meta⟩
Magnetic Resonance Imaging guided cardiac radiofrequency ablation 
   Valery Ozenne, Solenne Toupin, Pierre Bour, Aurélie Emilien, F. Vaillant, Baudouin Denis de Senneville, Pierre Jaïs, Jenny Benois-Pineau, Pascal Desbarats, Bruno Quesson 
   Innovation and Research in BioMedical engineering, 2015
Patch-Based Segmentation from MP2RAGE Images: Comparison to Conventional Techniques 
   Erhard T Naess-Schmidt, Anna Tietze, Irene K Mikkelsen, Mikkel Petersen, Jakob U Blicher, Pierrick Coupé, José V. Manjón, Simon F. Eskildsen 
   First International Workshop on Patch-based Techniques in Medical Images (Patch-MI 2015) (MICCAI), Oct 2015, Munich, Germany. pp.180-187, ⟨10.1007/978-3-319-28194-0_22⟩
Cerebellar sub-structures in cognitive impairment: volumetric and microstructural analyses at different stages of multiple sclerosis 
   Amadine Moroso, Aurélie Ruet, Delphine Lamargue, Fanny Munsch, Mathilde Deloire, Pierrick Coupé, Jean-Christophe Ouallet, Vincent Planche, Nicolas Moscufo, Dominik Meier, Thomas Tourdias, C. R. G. Guttmann, Vincent Dousset, Bruno Brochet 
   ECTRIMS, Oct 2015, Barcelona, Spain. pp.365
Hippocampal microstructural damage and memory impairment in clinically isolated syndrome 
   Vincent Planche, Aurélie Ruet, Pierrick Coupé, Delphine Lamargue, Mathilde Deloire, Fanny Munsch, Aurore Saubusse, Julie Charré-Morin, Nicolas Moscufo, Dominik Meier, C. R. G. Guttmann, Vincent Dousset, Bruno Brochet, Thomas Tourdias 
   ECTRIMS, Oct 2015, Barcelona, Spain. pp.363
volBrain: An online MRI brain volumetry system 
   Jose Vicente Manjon, Pierrick Coupé 
   Organization for Human Brain Mapping’15, Jun 2015, Honolulu, United States
Motion model based on the noise covariance matrix of a receive array 
   Anna Andreychenko, Baudouin Denis de Senneville, R. Navest, Jan Lagendijk, C. van den Berg 
   International Society of Magnetic Resonance in Medicine, May 2015, Toronto, Canada
Motion correction strategies for cardiac MR thermometry during RF-ablation 
   Valery Ozenne, Solenne Toupin, Baudouin Denis de Senneville, Pierre Bour, F. Vaillant, Matthieu Lepetit-Coiffe, Pierre Jaïs, B. Quesson 
   International Society of Magnetic Resonance in Medicine, May 2015, Toronto, Canada
Estimating dynamic 3D abdominal motion for radiation dose accumulation mapping using a PCA-based model and 2D navigators 
   Bjorn Stemkens, Rob Tijssen, Baudouin Denis de Senneville, Jan Lagendijk, C. van den Berg 
   International Society of Magnetic Resonance in Medicine, May 2015, Toronto, Canada
CORRECTION OF PHOTOBLEACHING FOR THE ASSESSMENT OF PHARMACOKINETIC PARAMETERS USING DYNAMIC FLUORESCENCE MICROSCOPY 
   Marc Derieppe, Clemens Bos, M. de Greef, Chrit Moonen, Baudouin Denis de Senneville 
   IEEE International Symposium on Biomedical Imaging (ISBI), May 2015, New-York, United States
Real-time estimation and characterization of physiological organ deformations for MR-guided interventional therapies 
   Baudouin Denis de Senneville, Abdallah El-Hamidi, Chrit Moonen 
   IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2015, New-York, United States
2014
Rapid Dynamic Temperature/R1/R2* Assessment : A Method With Potential For Monitoring Drug Delivery 
   Cyril Lorenzato, Chris Oerlemans, Alexandru Cernicanu, Mario Ries, Baudouin Denis de Senneville, Chrit Moonen, Clemens Bos 
   Nuclear Magnetic Resonance in Biomedicine, 2014
Structural imaging biomarkers of Alzheimer’s disease: predicting disease progression 
   Simon F. Eskildsen, Pierrick Coupé, Vladimir Fonov, Jens C. Pruessner, Louis Collins 
   Neurobiology of Aging, 2014, ⟨10.1016/j.neurobiolaging.2014.04.034⟩
NICE: Non-local Intracranial Cavity Extraction 
   José V. Manjón, Simon F. Eskildsen, Pierrick Coupé, José E. Romero, Louis D. Collins, Montserrat Robles 
   International Journal of Biomedical Imaging, 2014
A UNIFIED ASSESSMENT OF FULLY AUTOMATED HIPPOCAMPUS SEGMENTATION METHODS 
   Azar Zandifar, Vladimir Fonov, Pierrick Coupé, Jens C. Pruessner, D. Louis Collins 
   Alzheimer’s & Dementia : the Journal of the Alzheimer’s Association, 2014, 10 (4), pp.86. ⟨10.1016/j.jalz.2014.05.156⟩
Rapid dynamic R1/R2*/temperature assessment: a method with potential for monitoring drug delivery 
   Cyril Lorenzato, Chris Oerlemans, Alexandru Cernicanu, Mario Ries, Baudouin Denis de Senneville, Chrit Moonen, Clemens Bos 
   NMR in Biomedicine, 2014, 27 (11), pp.1267-1274. ⟨10.1002/nbm.3182⟩
Tracking of Cell Nuclei for Assessment of In Vitro Uptake Kinetics in Ultrasound-Mediated Drug Delivery using Fibered Confocal Fluorescence Microscopy 
   Marc Derieppe, Baudouin Denis de Senneville, Hugo Kuijf, Chrit Moonen, Clemens Bos 
   Molecular Imaging and Biology, 2014, 16 (5), pp.642-651. ⟨10.1007/s11307-014-0726-3⟩
Optimized PatchMatch for Near Real Time and Accurate Label Fusion 
   Vinh-Thong Ta, Rémi Giraud, D. Louis Collins, Pierrick Coupé 
   MICCAI 2014, Sep 2014, United States. 8 p
Anatomically Constrained Weak Classifier Fusion for Early Detection of Alzheimer’s Disease 
   Mawulawoé Komlagan, Vinh-Thong Ta, Xingyu Pan, Jean-Philippe Domenger, D. Louis Collins, Pierrick Coupé 
   5th International Workshop on Machine Learning in Medical Imaging, Sep 2014, United States. 8 p
Non-local PCA-based MRI denoising 
   Jose Vicente Manjon, Pierrick Coupé, Antoni Buades 
   Organization for Human Brain Mapping 2014 Annual Meeting, Jun 2014, Hamburg, Germany
Impact of DWI denoising on Track-Density Imaging 
   Pierrick Coupé, Olivier Périot, Jose Vicente Manjon, Bassem Hiba, Michèle Allard 
   Organization for Human Brain Mapping 2014 Annual Meeting, Jun 2014, Germany
Non Local Spatial and Angular Matching : a new denoising technique for diffusion MRI 
   Samuel St-Jean, Pierrick Coupé, Maxime Descoteaux 
   Joint Annual Meeting ISMRM-ESMRMB 2014, May 2014, Italy
Optimal MRI sampling and binning for online 4D retrospective respiratory motion analysis of the abdomen 
   Bjorn Stemkens, Rob Tijssen, Baudouin Denis de Senneville, Jan Lagendijk, C. van den Berg 
   International Society of Magnetic Resonance in Medicine, May 2014, Milan, Italy
Evaluation of respiration-induced magnetic field disturbance correction of MR thermometry in volunteers and in patients for MR-HIFU ablation of breast cancer: the effects of conscious sedation 
   Roel Deckers, Baudouin Denis de Senneville, Gerald Schubert, L Merckel, H. Vaessen, M. van den Bosch, Chrit Moonen, H.W. Bartels 
   International Society of Magnetic Resonance in Medicine, May 2014, Milan, Italy
Rapid Dynamic Temperature/T1/T2* Assessment: A Method With Potential For Monitoring Drug Delivery 
   Cyril Lorenzato, Chris Oerlemans, Baudouin Denis de Senneville, Chrit Moonen, Clemens Bos 
   International Society of Magnetic Resonance in Medicine, May 2014, Milan, Italy
Combined Magnetic Resonance and Ultrasound Echography Guidance for direct and indirect motion tracking 
   Baudouin Denis de Senneville, Yvan Regard, Chrit Moonen, Mario Ries 
   IEEE International Symposium on Biomedical Imaging, Apr 2014, Beijing, China
Cell Tracking for Assessment of In-Vitro Uptake Kinetics in Ultrasound-Mediated Drug Delivery using Fibered Confocal Fluorescence Microscopy 
   Marc Derieppe, Baudouin Denis de Senneville, Hugo Kuijf, Clemens Bos, Chrit Moonen 
   IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2014, Beijing, China
Motion Correction Techniques for MR-Guided HIFU Ablation of Abdominal Organs 
   Sébastien Roujol, Chrit Moonen, Baudouin Denis de Senneville 
   Frontiers of Medical Imaging, World Scientific, pp.355-376, 2014
2013
Diffusion Weighted Image Denoising Using Overcomplete Local PCA 
   José V. Manjón, Pierrick Coupé, Luis Concha, Antoni Buades, Louis D. Collins, Robles Montserrat 
   PLoS ONE, 2013, 8 (9), pp.e73021. ⟨10.1371/journal.pone.0073021⟩
Collaborative patch-based super-resolution for diffusion-weighted images. 
   Pierrick Coupé, José V Manjón, Maxime Chamberland, Maxime Descoteaux, Bassem Hiba 
   NeuroImage, 2013, epub ahead of print. ⟨10.1016/j.neuroimage.2013.06.030⟩
Extended Kalman Filtering for continuous volumetric MR-Temperature Imaging 
   Baudouin Denis de Senneville, Sébastien Roujol, Silke Hey, Chrit Moonen, Mario Ries 
   IEEE Transactions on Medical Imaging, 2013, 32 (4), pp.711-718
Segmentation of MR images via discriminative dictionary learning and sparse coding: Application to hippocampus labeling. 
   Tong Tong, Robin Wolz, Pierrick Coupé, Joseph V Hajnal, Daniel Rueckert 
   NeuroImage, 2013, epub ahead of print. ⟨10.1016/j.neuroimage.2013.02.069⟩
MRI contrast variation of thermosensitive magnetoliposomes triggered by focused ultrasound: a tool for image guided local drug delivery 
   Cyril Lorenzato, Alexandru Cernicanu, Marie-Edith Meyre, Matthieu Germain, Agnès Pottier., Laurent Levy, Baudouin Denis de Senneville, Clemens Bos, Chrit Moonen, Pierre Smirnov 
   Contrast Media and Molecular Imaging, 2013, pp.185-192
Volumetric analysis of medial temporal lobe structures in brain development from childhood to adolescence. 
   Shiyan Hu, Jens C Pruessner, Pierrick Coupé, D Louis Collins 
   NeuroImage, 2013, 74C, pp.276-287. ⟨10.1016/j.neuroimage.2013.02.032⟩
Real-Time Assessment of Ultrasound-Mediated Drug Delivery Using Fibered Confocal Fluorescence Microscopy 
   Marc Derieppe, Anna Yudina, Matthieu Lepetit-Coiffé, Baudouin Denis de Senneville, Clemens Bos, Chrit Moonen 
   Molecular Imaging and Biology, 2013, 15 (1), pp.3-11
Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson’s disease 
   Claire Haegelen, Pierrick Coupé, Vladimir Fonov, Nicolas Guizard, Pierre Jannin, Xavier Morandi, D Louis Collins 
   International Journal of Computer Assisted Radiology and Surgery, 2013, 8 (1), pp.99-110. ⟨10.1007/s11548-012-0675-8⟩
Extended Kalman Filtering for Continuous Volumetric MR-Temperature Imaging 
   Baudouin Denis de Senneville, Sébastien Roujol, Silke Hey, Chrit Moonen, Mario Ries 
   IEEE Transactions on Medical Imaging, 2013, 32 (4), pp.711-718. ⟨10.1109/TMI.2012.2234760⟩
MRI contrast variation of thermosensitive magnetoliposomes triggered by focused ultrasound: a tool for image-guided local drug delivery 
   Cyril Lorenzato, Alexandru Cernicanu, Marie-Edith Meyre, Matthieu Germain, Agnès Pottier, Laurent Levy, Baudouin Denis de Senneville, Clemens Bos, Chrit Moonen, Pierre Smirnov 
   Contrast Media and Molecular Imaging, 2013, 8 (2), pp.185-192
Real-time anticipation of organ displacement for MR-guidance of interventional procedures 
   Baudouin Denis de Senneville, Mario Ries, Chrit Moonen 
   IEEE International Symposium on Biomedical Imaging, Apr 2013, France
Particle Swarm Optimization in Multi-Tensor Imaging 
   Micheal Paquette, Eleftherios Garyfallidis, Samuel St-Jean, Pierrick Coupé, Maxime Descoteaux 
   IEEE International Symposium on Biomedical Imaging (ISBI 2013), Apr 2013, United States. pp.16
Deconvolution enhanced Generalized Q-Sampling 2 and DSI deconvolution 
   Eleftherios Garyfallidis, Michael Paquette, Samuel St-Jean, Pierrick Coupé, Maxime Descoteaux 
   IEEE International Symposium on Biomedical Imaging (ISBI 2013), Apr 2013, United States. pp.18
Constrained spherical deconvolution on signal and ODF values 
   Eleftherios Garyfallidis, Samuel St-Jean, Michael Paquette, Pierrick Coupé, Maxime Descoteaux 
   IEEE International Symposium on Biomedical Imaging (ISBI 2013), Apr 2013, United States. pp.17
2012
Prediction of Alzheimer’s disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning. 
   Simon F. Eskildsen, Pierrick Coupé, Daniel García-Lorenzo, Vladimir Fonov, Jens C Pruessner, D Louis Collins 
   NeuroImage, 2012, 65, pp.511-521. ⟨10.1016/j.neuroimage.2012.09.058⟩
Scoring by nonlocal image patch estimator for early detection of Alzheimer’s disease 
   Pierrick Coupé, Simon F. Eskildsen, Jose V. Manjon, Vladimir Fonov, Jens C. Pruessner, Michèle Allard, Louis Collins 
   Neuroimage-Clinical, 2012, 1 (1), pp.141-152. ⟨10.1016/j.nicl.2012.10.002⟩
Nonlocal regularization for active appearance model: Application to medial temporal lobe segmentation. 
   Shiyan Hu, Pierrick Coupé, Jens C Pruessner, D Louis Collins 
   Human Brain Mapping, 2012, epub ahead of print. ⟨10.1002/hbm.22183⟩
Towards Optimized MR Thermometry of the Human Heart at 3T 
   Silke Hey, Alexandru Cernicanu, Baudouin Denis de Senneville, Sébastien Roujol, Mario Ries, Pierre Jais, Chrit Moonen, Bruno Quesson 
   NMR in Biomedicine, 2012, pp.35-43
Validation of a hybrid Doppler ultrasound vessel-based registration algorithm for neurosurgery. 
   Sean Jy-Shyang Chen, Ingerid Reinertsen, Pierrick Coupé, Charles X B Yan, Laurence Mercier, D Rolando del Maestro, D Louis Collins 
   International Journal of Computer Assisted Radiology and Surgery, 2012, 7 (5), pp.667-85. ⟨10.1007/s11548-012-0680-y⟩
A CANDLE for a deeper in vivo insight. 
   Pierrick Coupé, Martin Munz, Jose V Manjón, Edward S Ruthazer, D. Louis Collins 
   Medical Image Analysis, 2012, 16 (4), pp.849-64. ⟨10.1016/j.media.2012.01.002⟩
Robust real time constrained estimation of respiratory motion interventional MRI on mobile organs 
   Sébastien Roujol, Jenny Benois-Pineau, Baudouin de Senneville, Mario Ries, Bruno Quesson, Chrit T. W. Moonen 
   IEEE Transactions on Information Technology in Biomedicine, 2012, 16 (3), pp.365 - 374. ⟨10.1109/TITB.2012.2190366⟩
Feasibility of fast MR-thermometry during cardiac RF ablation 
   Baudouin Denis de Senneville, Sébastien Roujol, Pierre Jaïs, Chrit Moonen, Gwenaël Herigault, Bruno Quesson 
   Nuclear Magnetic Resonance in Biomedicine, 2012, pp.556-562
Robust adaptive extended Kalman filtering for real time MR-thermometry guided HIFU interventions 
   Sébastien Roujol, Baudouin Denis de Senneville, Silke Hey, Chrit Moonen, Mario Ries 
   IEEE Transactions on Medical Imaging, 2012, 31 (3), pp.533-542
Simultaneous segmentation and grading of anatomical structures for patient’s classification: application to Alzheimer’s disease. 
   Pierrick Coupé, Simon F Eskildsen, José V Manjón, Vladimir Fonov, D Louis Collins 
   NeuroImage, 2012, 59 (4), pp.3736-47. ⟨10.1016/j.neuroimage.2011.10.080⟩
BEaST: brain extraction based on nonlocal segmentation technique. 
   Simon F. Eskildsen, Pierrick Coupé, Vladimir Fonov, José V. Manjón, Kelvin K. Leung, Nicolas Guizard, Shafik N. Wassef, Lasse Riis Ostergaard, D Louis Collins 
   NeuroImage, 2012, 59 (3), pp.2362-73. ⟨10.1016/j.neuroimage.2011.09.012⟩
New methods for MRI denoising based on sparseness and self-similarity. 
   José V. Manjón, Pierrick Coupé, Antonio Buades, D. Louis Collins, Montserrat Robles 
   Medical Image Analysis, 2012, 16 (1), pp.18-27. ⟨10.1016/j.media.2011.04.003⟩
Feasibility of fast MR-thermometry during cardiac radiofrequency ablation 
   Baudouin Denis de Senneville, Sébastien Roujol, Pierre Jaïs, Chrit T. W. Moonen, Gwenaël Herigault, Bruno Quesson 
   NMR in Biomedicine, 2012, 25 (4), pp.556-562. ⟨10.1002/nbm.1771⟩
Robust Real-Time-Constrained Estimation of Respiratory Motion for Interventional MRI on Mobile Organs 
   Sébastien Roujol, Jenny Benois-Pineau, Baudouin Denis de Senneville, Mario Ries, Bruno Quesson, Chrit Moonen 
   IEEE Transactions on Information Technology in Biomedicine, 2012, 16 (3), pp.365-374. ⟨10.1109/TITB.2012.2190366⟩
Robust Adaptive Extended Kalman Filtering for Real Time MR-Thermometry Guided HIFU Interventions 
   Sébastien Roujol, Baudouin Denis de Senneville, Silke Hey, Chrit Moonen, Mario Ries 
   IEEE Transactions on Medical Imaging, 2012, 31 (3), pp.533-542. ⟨10.1109/TMI.2011.2171772⟩
Multi-atlas labeling with population-specific template and non-local patch-based label fusion 
   Vladimir Fonov, Pierrick Coupé, Simon F. Eskildsen, Jose V. Manjon, Louis Collins 
   MICCAI 2012 Workshop on Multi-Atlas Labeling, Oct 2012, Nice, France. pp.63-66
SNIPE: A New Method to Identify Imaging Biomarker for Early Detection of Alzheimer’s Disease 
   Pierrick Coupé, Simon F. Eskildsen, José V. Manjón, Vladimir Fonov, Jens C. Pruessner, Michèle Allard, Louis Collins 
   MICCAI 2012 Workshop on Novel Biomarkers for Alzheimer’s Disease and Related Disorders, Oct 2012, Nice, France. pp.41-51
Improving prediction of Alzheimer’s disease using patterns of cortical thinning and homogenizing images according to disease stage 
   Simon F. Eskildsen, Pierrick Coupé, Daniel García-Lorenzo, Vladimir Fonov, Jens C. Pruessner, Louis Collins 
   MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer’s Disease and Related Disorders, Oct 2012, Nice, France. pp.79-90
Robust individual template pipeline for longitudinal MR images 
   Nicolas Guizard, Vladimir Fonov, Bérengère Aubert-Broche, Daniel García-Lorenzo, Pierrick Coupé, Simon Eskildsen, D. Louis Collins 
   MICCAI 2012 Workshop on Novel Biomarkers for Alzheimer’s Disease and Related Disorders, Oct 2012, France. pp.231
A new framework for analyzing structural volume changes of longitudinal brain MRI data 
   Bérengère Aubert-Broche, Vladimir Fonov, Daniel García-Lorenzo, Abderazzak Mouiha, Nicolas Guizard, Pierrick Coupé, Simon F. Eskildsen, Louis Collins 
   Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Oct 2012, Nice, France. pp.50-62
Visualizing stages of cortical atrophy in progressive MCI from the ADNI cohort 
   Simon F. Eskildsen, Vladimir Fonov, Pierrick Coupé, Louis Collins 
   Alzheimer’s Association International Conference, Jul 2012, Vancouver, Canada. epub ahead of print
Patch-Based Morphometry: Application to Alzheimer’s Disease 
   Pierrick Coupé, José V. Manjón, Vladimir Fonov, Simon F. Eskildsen, Louis D. Collins 
   Alzheimer’s Association International Conference, Jun 2012, Vancouver, Canada. epub ahead of print
Superresolution improves MRI cortical segmentation with FACE 
   Simon F. Eskildsen, José V. Manjón, Pierrick Coupé, Vladimir Fonov, Louis D. Collins 
   Organization for Human Brain Mapping, Jun 2012, Beijing, China
Combined Ultrasound Echography and Magnetic Resonance Imaging Guidance for motion compensated HIFU Interventions 
   Mario Ries, Baudouin Denis de Senneville, Yvan Regard, Chrit Moonen 
   International symposium on Therapeutic Ultrasound, Jun 2012, France. pp.202-206
Automatic lateral ventricle segmentation in infant population with high risk of autism 
   Vladimir Fonov, Pierrick Coupé, Martin Styner, Louis D. Collins 
   Organization for Human Brain Mapping, Jun 2012, Beijing, China
DWI denoising using overcomplete Local PCA Decomposition 
   José V. Manjón, Pierrick Coupé, Luis Concha, Antoni Buades, Louis Collins, Montserrat Robles 
   ISMRM 20th Annual Meeting, May 2012, Melbourne, Australia. pp.3580
Robust real-time MR-geometric distortion correction for interventional procedure on mobile targets 
   Baudouin Denis de Senneville, Mario Ries, Chrit Moonen 
   IEEE International Symposium on Biomedical Imaging, May 2012, France. pp.964-967
MRI-guided high-intensity focused ultrasound sonication of liver and kidney 
   Baudouin Denis de Senneville, Mario Ries, Lambertus Bartels, Chrit Moonen 
   Interventional Magnetic Resonance Imaging, Springer Berlin Heidelberg, pp.349-366, 2012
2011
Adaptive Multiresolution Non-Local Means Filter for 3D MR Image Denoising 
   Pierrick Coupé, José V. Manjón, Montserrat Robles, Louis D. Collins 
   IET Image Processing, 2011
3D Rigid Registration of Intraoperative Ultrasound and Preoperative MR Brain Images based on Hyperechogenic Structures 
   Pierrick Coupé, Pierre Hellier, Xavier Morandi, Christian Barillot 
   International Journal of Biomedical Imaging, 2011, pp.53131
Appearance-based modeling for segmentation of hippocampus and amygdala using multi-contrast MR imaging. 
   Shiyan Hu, Pierrick Coupé, Jens C. Pruessner, Louis D. Collins 
   NeuroImage, 2011, 58 (2), pp.549-59. ⟨10.1016/j.neuroimage.2011.06.054⟩
Non-invasive thermo-therapy of abdominal organs 
   Baudouin Denis de Senneville, Mario Ries, Bruno Quesson, Hervé Trillaud, Rémi Berriet, Gérard Fleury, Chrit T. W. Moonen 
   Innovation and Research in BioMedical engineering, 2011, pp.109-112
Automatic Non-Rigid Calibration of Image Registration for Real Time Interventional MRI of mobile organs 
   Sébastien Roujol, Mario Ries, Chrit T. W. Moonen, Baudouin Denis de Senneville 
   IEEE Transactions on Medical Imaging, 2011, pp.1737-45
Spectrally selective pencil-beam navigator for motion compensation of MR-guided high-intensity focused ultrasound therapy of abdominal organs 
   Max Köhler, Baudouin Denis de Senneville, Bruno Quesson, Chrit T. W. Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2011, pp.102-111
MR-guided thermotherapy of abdominal organs using a robust PCA-based motion descriptor 
   Baudouin Denis de Senneville, Mario Ries, G. Maclair, Chrit T. W. Moonen 
   IEEE Transactions on Medical Imaging, 2011, pp.1987-1995
Non-invasive thermo-therapy of abdominal organs 
   Baudouin Denis de Senneville, Mario Ries, Bruno Quesson, Hervé Trillaud, Remi Berriet, Gérard Fleury, Chrit Moonen 
   Innovation and Research in BioMedical engineering, 2011
Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. 
   Pierrick Coupé, José V. Manjón, Vladimir Fonov, Jens C. Pruessner, Montserrat Robles, D Louis Collins 
   NeuroImage, 2011, 54 (2), pp.940-954. ⟨10.1016/j.neuroimage.2010.09.018⟩
Spectrally selective pencil-beam navigator for motion compensation of MR-guided high-intensity focused ultrasound therapy of abdominal organs 
   Max O Köhler, Baudouin Denis de Senneville, Bruno Quesson, Chrit T W Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2011, 66 (1), pp.102-111. ⟨10.1002/mrm.22784⟩
Simultaneous segmentation and grading of hippocampus for patient classification with Alzheimer’s disease. 
   Pierrick Coupé, Simon F Eskildsen, José V Manjón, Vladimir Fonov, D Louis Collins 
   Medical image computing and computer-assisted intervention : MICCAI .. International Conference on Medical Image Computing and Computer-Assisted Intervention, 2011, 14 (Pt 3), pp.149-57
MR-Guided Thermotherapy of Abdominal Organs Using a Robust PCA-Based Motion Descriptor 
   Baudouin Denis de Senneville, Mario Ries, Grégory Maclair, Chrit Moonen 
   IEEE Transactions on Medical Imaging, 2011, 30 (11), pp.1987-1995. ⟨10.1109/TMI.2011.2161095⟩
Automatic Non-Rigid Calibration of Image Registration for Real Time MR-guided HIFU ablations of mobile organs 
   Sébastien Roujol, Mario Ries, Chrit Moonen, Baudouin Denis de Senneville 
   IEEE Transactions on Medical Imaging, 2011, 30 (10), pp.1737-1745. ⟨10.1109/TMI.2011.2144615⟩
Real-time Volumetric MRI Thermometry of Focused Ultrasound Ablation in vivo : A feasibility study in pig liver and kidney 
   Bruno Quesson, Laurent Christophe, G. Maclair, Baudouin Denis de Senneville, Charles Mougenot, Mario Ries, Thibaut Carteret, A. Rullier, Chrit T. W. Moonen 
   NMR in Biomedicine, 2011, 24 (2), pp.145-153. ⟨10.1002/nbm.1563⟩
BEaST: Brain extraction using multiresolution nonlocal segmentation. 
   Simon Eskildsen, Pierrick Coupé, Kelvin K. Leung, Vladimir Fonov, Nicolas Guizard, Shafik N. Wassef, Lasse Riis Ostergaard, Louis D. Collins 
   MICCAI Workshop on Multi-Atlas Labeling and Statistical Fusion, Sep 2011, Toronto, Canada. pp.97-108
Validation of appearance-model based segmentation with patch-based refinement on medial temporal lobe structures 
   Shiyan Hu, Pierrick Coupé, Jens C. Pruessner, Louis D. Collins 
   MICCAI Workshop on Multi-Atlas Labeling and Statistical Fusion, Sep 2011, Toronto, Canada. pp.28-37
Extended Kalman filtering for MR-thermometry guided High Intensity Focused Ultrasound using the bio heat transfer equation 
   Sébastien Roujol, Baudouin Denis de Senneville, Silke Hey, Chrit T. W. Moonen, Mario Ries 
   IEEE International Conference on Image Processing, Sep 2011, Belgium
Atrophy specific MRI brain template for Alzheimer’s disease and Mild Cognitive Impairment 
   Vladimir Fonov, Pierrick Coupé, Simon F. Eskildsen, Louis D. Collins 
   Alzheimer’s Association International Conference, Jul 2011, France. pp.S58
Influence of the Training Library Composition on a Patch-based label fusion method: Application to Hippocampus Segmentation on ADNI dataset. 
   Pierrick Coupé, Vladimir Fonov, Simon F. Eskildsen, José V. Manjón, Douglas Arnold, Louis D. Collins 
   Alzheimer’s Association International Conference, Jul 2011, France. pp.S24
Prediction of MCI converters in the ADNI cohort using patterns of cortical thinning 
   Simon F. Eskildsen, Vladimir Fonov, Pierrick Coupé, Lasse Riis Ostergaard, Louis D. Collins 
   Alzheimer’s Association International Conference, Jul 2011, France. pp.S211
Robust fusion of Jacobian maps for Deformation-Based Morphometry 
   Nicolas Guizard, Pierrick Coupé, Vladimir Fonov, Douglas Arnold, Louis D. Collins 
   Organization for Human Brain Mapping 2011 Annual Meeting, Jun 2011, Canada
MRI denoising based on Sparseness and Self-Similarity 
   José V. Manjón, Pierrick Coupe, Antoni Buades, Louis D. Collins, Montserrat Robles 
   Organization for Human Brain Mapping 2011 Annual Meeting, Jun 2011, Canada
Validation of basal ganglia segmentation on a 3T MRI template 
   Claire Haegelen, Nicolas Guizard, Pierrick Coupé, Florent Lalys, Pierre Jannin, Xavier Morandi, D. Louis Collins 
   Human Brain Mapping, Jun 2011, Quebec City, Canada
Effect of non-local means denoising on cortical segmentation accuracy with FACE 
   Simon F. Eskildsen, Pierrick Coupé, Vladimir Fonov, Lasse Riis Ostergaard, Louis D. Collins 
   Organization for Human Brain Mapping 2011 Annual Meeting, Jun 2011, Canada
Prediction of Alzheimer’s Disease in Subjects with Mild Cognitive Impairment Using Structural Patterns of Cortical Thinning 
   Simon F. Eskildsen, Vladimir Fonov, Pierrick Coupé, Lasse Riis Ostergaard, Louis D. Collins 
   15th Nordic-Baltic Conference on Biomedical Engineering and Medical Physics (NBC 2011), Jun 2011, Denmark. pp.156-159
Robust Real-Time Motion Estimation For MR-Thermometry 
   Sébastien Roujol, Mario Ries, Chrit T. W. Moonen, Baudouin Denis de Senneville 
   IEEE International Symposium on Biomedical Imaging, May 2011, United States
Super-Resolution For Real-Time Volumetric MR-Temperature Monitoring 
   Baudouin Denis de Senneville, Silke Hey, Chrit T. W. Moonen, Mario Ries 
   IEEE International Symposium on Biomedical Imaging, May 2011, United States
MRI-Guided HIFU : Thermal Mapping and Gene Activation 
   Chrit Moonen, Baudouin Denis de Senneville, Bruno Quesson, Franck Couillaud 
   Therapeutic Ultrasound, Nova Science Publishers, 2011
2010
Non-local MRI upsampling. 
   José V. Manjón, Pierrick Coupé, Antonio Buades, Vladimir Fonov, D. Louis Collins, Montserrat Robles 
   Medical Image Analysis, 2010, 14 (6), pp.784-92. ⟨10.1016/j.media.2010.05.010⟩
Real-time MR-Thermometry and Dosimetry for interventional guidance on abdominal organs 
   Sébastien Roujol, Mario Ries, Bruno Quesson, Chrit Moonen, Baudouin Denis de Senneville 
   Magnetic Resonance in Medicine, 2010, pp.1080-1087
A method for MRI Guidance of Intercostal High Intensity Focused Ultrasound Ablation in the Liver 
   Bruno Quesson, Mathilde Merle, Max Köhler, Charles Mougenot, Sébastien Roujol, Baudouin Denis de Senneville, Chrit T. W. Moonen 
   Medical Physics, 2010, pp.2533-40
Rapid motion correction in MR guided High Intensity Focused Ultrasound heating using real-time ultrasound echo information 
   Philippe Lourenço de Oliveira, Baudouin Denis de Senneville, Iulus Dragonu, Chrit T. W. Moonen 
   Nuclear Magnetic Resonance in Biomedicine, 2010, pp.1103-1108
Real-Time 3D Target Tracking in MRI guided Focused Ultrasound Ablations in moving Tissues 
   Mario Ries, Baudouin Denis de Senneville, Sébastien Roujol, Yasmina Berber, Bruno Quesson, Chrit Moonen 
   Magnetic Resonance in Medicine, 2010, pp.1704-12
Motion Correction in MR Thermometry of Abdominal Organs : A Comparison of the Referenceless vs the Multi-baseline Approach 
   Baudouin Denis de Senneville, Sébastien Roujol, Chrit T. W. Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2010, pp.1373-1381
Robust Rician noise estimation for MR images. 
   Pierrick Coupé, José V. Manjón, Elias Gedamu, Douglas L. Arnold, Montserrat Robles, D Louis Collins 
   Medical Image Analysis, 2010, 14 (4), pp.483-93. ⟨10.1016/j.media.2010.03.001⟩
Online real-time reconstruction of adaptive TSENSE with commodity CPU / GPU hardware 
   Sébastien Roujol, Baudouin Denis de Senneville, Erkki Vahalla, Thomas Sangild Sorensen, Chrit Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2010
Real time ultrasound image denoising 
   Fernanda Palhano Xavier de Fontes, Guillermo Andrade Barroso, Pierrick Coupé, Pierre Hellier 
   Journal of Real-Time Image Processing, 2010, ⟨10.1007/s11554-010-0158-5⟩
An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images 
   Pierre Hellier, Pierrick Coupé, Xavier Morandi, D. Louis Collins 
   Medical Image Analysis, 2010, 14 (2), pp.195-204. ⟨10.1016/j.media.2009.10.007⟩
Adaptive non-local means denoising of MR images with spatially varying noise levels. 
   José V. Manjón, Pierrick Coupé, Luis Martí-Bonmatí, D Louis Collins, Montserrat Robles 
   Journal of Magnetic Resonance Imaging, 2010, 31 (1), pp.192-203. ⟨10.1002/jmri.22003⟩
Motion correction in MR thermometry of abdominal organs: A comparison of the referenceless vs. the multibaseline approach 
   Baudouin Denis de Senneville, Sébastien Roujol, Chrit Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2010, 64 (5), pp.1373-1381. ⟨10.1002/mrm.22514⟩
Real-time MR-thermometry and dosimetry for interventional guidance on abdominal organs 
   Sébastien Roujol, Mario Ries, Bruno Quesson, Chrit Moonen, Baudouin Denis de Senneville 
   Magnetic Resonance in Medicine, 2010, 13, pp.3482 - 1087. ⟨10.1002/mrm.22309⟩
A method for MRI guidance of intercostal high intensity focused ultrasound ablation in the liver 
   Bruno Quesson, Mathilde Merle, Max Köhler, Charles Mougenot, Sebastien Roujol, Baudouin Denis de Senneville, Chrit Moonen 
   Medical Physics, 2010, 37 (6), pp.2533-2540. ⟨10.1118/1.3413996⟩
MRI superresolution using self-similarity and image priors. 
   José V Manjón, Pierrick Coupé, Antonio Buades, D Louis Collins, Montserrat Robles 
   International Journal of Biomedical Imaging, 2010, 2010, pp.425891. ⟨10.1155/2010/425891⟩
Rapid motion correction in MR-guided high-intensity focused ultrasound heating using real-time ultrasound echo information 
   Philippe Lourenço de Oliveira, Baudouin Denis de Senneville, Iulius Dragonu, Chrit T W Moonen 
   NMR in Biomedicine, 2010, 23 (9), pp.1103-1108. ⟨10.1002/nbm.1526⟩
Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation 
   Pierrick Coupé, Jose Vicente Manjon, Vladimir Fonov, Jens C. Pruessner, Montserrat Robles, Louis D. Collins 
   Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010, Sep 2010, Beijing, China. pp.129-136, ⟨10.1007/978-3-642-15711-0_17⟩
Robust 3D Reconstruction and Mean-Shift Clustering of Motoneurons from Serial Histological Images 
   Nicolas Guizard, Pierrick Coupé, Nicolas Stifani, Stefano Stifani, D. Louis Collins 
   Medical Imaging and Augmented Reality (MIAR), Sep 2010, China. pp.191-199, ⟨10.1007/978-3-642-15699-1⟩
Impact of Non-local Means filtering on Brain Tissue Segmentation 
   Christian Gaser, Pierrick Coupé 
   Organization for Human Brain Mapping 2010 Annual Meeting, Jun 2010, United States
A novel approach for high-resolution image reconstruction for in-vivo fetal brain MRI 
   Cedric Clouchoux, Pierrick Coupé, José V. Manjón, Nicolas Guizard, Marine Bouyssi-Kobar, Mylene Lefebvre, Adre Du Plessis, Alan Evans, Catherine Limperopoulos 
   Organization for Human Brain Mapping 2010 Annual Meeting, Jun 2010, United States
Template Construction using a Patch-based Robust Estimator 
   Pierrick Coupé, Vladimir Fonov, José V. Manjón, Louis D. Collins 
   Organization for Human Brain Mapping 2010 Annual Meeting, Jun 2010, Spain
A new criterion for motion estimation assessment for MR-thermometry applications 
   Sébastien Roujol, Mario Ries, Bruno Quesson, Jenny Benois-Pineau, Chrit Moonen, Baudouin de Senneville 
   7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010, Apr 2010, Rotterdam, Netherlands. pp.1241-1244, ⟨10.1109/ISBI.2010.5490220⟩
Intraoperative ultrasonography for the correction of brainshift based on the matching of hyperechogenic structures 
   Pierrick Coupé, Pierre Hellier, Xavier Morandi, Christian Barillot 
   IEEE International Symposium on Biomedical Imaging, Apr 2010, Rotterdam, Netherlands. pp.1405 - 1408, ⟨10.1109/ISBI.2010.5490261⟩
Rapid and volumetric MRI thermometry for monitoring HIFU ablation in the liver during breathing 
   Bruno Quesson, Laurent Christophe, Gregory Maclair, Baudouin Denis de Senneville, Mario Ries, Chrit T. W. Moonen 
   International Symposium of Therapeutic Ultrasound, 2010, Aix en Provence, France. pp.239-242
Three dimensional motion compensation for real-time MRI guided focused ultrasound treatment of abdominal organs 
   Mario Ries, Baudouin Denis de Senneville, Gregory Maclair, Bruno Quesson, Chrit T. W. Moonen 
   International Symposium of Therapeutic Ultrasound, 2010, Aix en Provence, France. pp.243-246
Adaptive volumetric MR-guided high-intensity focused ultrasound ablations in moving organs 
   Silke Hey, Baudouin Denis de Senneville, Max Köhler, Bruno Quesson, Chrit T. W. Moonen, Mario Ries 
   International Symposium of Therapeutic Ultrasound, 2010, Aix en Provence, France
Real time constrained motion estimation for ECG-gated cardiac MRI 
   Sébastien Roujol, Jenny Benois-Pineau, Baudouin Denis de Senneville, Bruno Quesson, Mario Ries, Chrit T. W. Moonen 
   International Conference on Image Processing, 2010, Hong Kong, China
2009
Nonlocal means-based speckle filtering for ultrasound images. 
   Pierrick Coupé, Pierre Hellier, Charles Kervrann, Christian Barillot 
   IEEE Transactions on Image Processing, 2009, 18 (10), pp.2221-9. ⟨10.1109/TIP.2009.2024064⟩
On-line correction of respiratory-induced field disturbances for continuous MR-thermometry in the breast 
   Silke Hey, Gregory Maclair, Baudouin Denis de Senneville, Matthieu Lepetit-Coiffé, Yasmina Berber, Bruno Quesson, Chrit T. W. Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2009, pp.1494-1499
Molecular MR imaging and MR-guided ultrasound therapies in cancer 
   Nicolas Grenier, Bruno Quesson, Baudouin Denis de Senneville, Hervé Trillaud, Franck Couillaud, Chrit T. W. Moonen 
   Acta medica belgica, 2009, 92 (1), pp.8-12
Online real-time reconstruction of adaptive TSENSE with commodity CPU / GPU hardware 
   Sébastien Roujol, Baudouin Denis de Senneville, Erki Vahalla, Thomas Sangild Sorensen, Chrit T. W. Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2009, pp.1658-1664
Real-time geometric distortion correction for interventional imaging with echo-planar imaging (EPI) 
   Iulius Dragonu, Baudouin Denis de Senneville, Bruno Quesson, Chrit Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2009, 61 (4), pp.994-1000. ⟨10.1002/mrm.21903⟩
An object-based method for Rician noise estimation in MR images. 
   Pierrick Coupé, Jose Vicente Manjon, Elias Gedamu, Douglas L. Arnold, Montserrat Robles, Louis D. Collins 
   Medical image computing and computer-assisted intervention : MICCAI .. International Conference on Medical Image Computing and Computer-Assisted Intervention, 2009, 12 (Pt 2), pp.601-8. ⟨10.1007/978-3-642-04271-3_73⟩
Object-based Rician Noise Estimation for MR Images 
   Pierrick Coupé, José V. Manjón, Elias Gedamu, Douglas Arnold, Montserrat Robles, Louis D. Collins 
   Organization for Human Brain Mapping 2009 Annual Meeting, Jul 2009, United States. pp.s81, ⟨10.1016/S1053-8119(09)70571-3⟩
Adaptive Multiresolution Denoising Filter for 3D MR Images 
   Pierrick Coupé, José V. Manjón, Montserrat Robles, Louis D. Collins 
   Organization for Human Brain Mapping 2009 Annual Meeting, Jun 2009, United States. pp.S50, ⟨10.1016/S1053-8119(09)70119-3⟩
Spatially Adaptive Non-local MRI Denoising 
   José V. Manjón, Pierrick Coupé, Luis Martí-Bonmatí, Louis D. Collins, Montserrat Robles 
   Organization for Human Brain Mapping 2009 Annual Meeting, Jun 2009, United States. pp.S72, ⟨10.1016/S1053-8119(09)70443-4⟩
2008
Real time monitoring of radiofrequency ablation based on MR thermometry and thermal dose in the pig liver in vivo 
   Olivier Seror, Matthieu Lepetit-Coiffé, B. Le Bail, Baudouin Denis de Senneville, Hervé Trillaud, Chrit T. W. Moonen, Bruno Quesson 
   European Radiology, 2008, 18 (2), pp.408-16. ⟨10.1007/s00330-007-0761-4⟩
Improvement of MRI-Functional measurement with automatic movement correction in native and transplanted kidneys 
   Baudouin Denis de Senneville, Iosif Mendichovszky, Sébastien Roujol, Isky Gordon, Chrit T. W. Moonen, Nicolas Grenier 
   Journal of Magnetic Resonance Imaging, 2008, pp.970-978
Acceleration and validation of optical flow based deformable registration for image-guided radiotherapy 
   Karsten Noe, Baudouin Denis de Senneville, U.V. Elstrom, K. Tanderup, Thomas Sangild Sorensen 
   Acta Oncologica, 2008, pp.1286-1293
Real-time Geometric Distortion Correction for Interventional Imaging with EPI 
   Iulus Dragonu, Baudouin Denis de Senneville, Bruno Quesson, Chrit T. W. Moonen, Mario Ries 
   Magnetic Resonance in Medicine, 2008, pp.994-1000
Three dimensional spatial and temporal temperature control with MR- thermometry guided Focused Ultrasound 
   Charles Mougenot, Bruno Quesson, Baudouin Denis de Senneville, Philippe Lourenço de Oliveira, Sarah Sprinkhuizen, J. Palussiere, Nicolas Grenier, Chrit T. W. Moonen 
   Magnetic Resonance in Medicine, 2008, pp.603-14
An optimized blockwise nonlocal means denoising filter for 3-D magnetic resonance images. 
   Pierrick Coupé, Pierre Yger, Sylvain Prima, Pierre Hellier, Charles Kervrann, Christian Barillot 
   IEEE Transactions on Medical Imaging, 2008, 27 (4), pp.425-41. ⟨10.1109/TMI.2007.906087⟩
Measurement of glomerular filtration rate with magnetic resonance imaging: principles, limitations, and expectations 
   Nicolas Grenier, Iosif Mendichovszky, Baudouin Denis de Senneville, Sébastien Roujol, Pascal Desbarats, Michael Pedersen, Kevin Wells, Jorgen Frokiaer, Isky Gordon 
   Seminars in Nuclear Medicine, 2008, 38 (1), pp.47-55
Acceleration and validation of optical flow based deformable registration for image-guided radiotherapy 
   Karsten Østergaard Noe, Baudouin Denis de Senneville, Vindelev Ulrik, Kari Tanderup, Thomas Sangild Sørensen 
   Acta Oncologica, 2008, 47 (7), pp.1286-1293. ⟨10.1080/02841860802258760⟩
Improvement of MRI-functional measurement with automatic movement correction in native and transplanted kidneys 
   Baudouin Denis de Senneville, Iosif Alexandru Mendichovszky, Sébastien Roujol, Isky Gordon, Chrit Moonen, Nicolas Grenier 
   Journal of Magnetic Resonance Imaging, 2008, 28 (4), pp.970-978. ⟨10.1002/jmri.21515⟩
3D Wavelet Sub-Bands Mixing for Image Denoising 
   Pierrick Coupé, Pierre Hellier, Sylvain Prima, Charles Kervrann, Christian Barillot 
   International Journal of Biomedical Imaging, 2008, 2008 (Article ID 590183), pp.590183. ⟨10.1155/2008/590183⟩
Measurement of Glomerular Filtration Rate With Magnetic Resonance Imaging: Principles, Limitations, and Expectations 
   Nicolas Grenier, Iosif Mendichovszky, Baudouin Denis de Senneville, Sébastien Roujol, Pascal Desbarat, Michael Pedersen, Kevin Wells, Jorgen Frokiaer, Isky Gordon 
   Seminars in Nuclear Medicine, 2008, 38 (1), pp.47-55. ⟨10.1053/j.semnuclmed.2007.09.004⟩
Rician noise removal by non-Local Means filtering for low signal-to-noise ratio MRI: applications to DT-MRI. 
   Nicolas Wiest-Daesslé, Sylvain Prima, Pierrick Coupé, Sean Patrick Morrissey, Christian Barillot 
   11th International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2008, New York, United States. pp.171-9, ⟨10.1007/978-3-540-85990-1_21⟩
Bayesian Non Local Means-Based Speckle filtering 
   Pierrick Coupé, Pierre Hellier, Charles Kervrann, Christian Barillot 
   IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, Paris, France
Acoustic shadows detection, application to accurate reconstruction of 3D intraoperative ultrasound 
   Pierre Hellier, Pierrick Coupé, Pierre Meyer, Xavier Morandi, D. Louis Collins 
   IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, Paris, France
An optimised multi-baseline approach for on-line MR-temperature monitoring on commodity graphics hardware 
   Baudouin Denis de Senneville, Karsten Noe, Mario Ries, Michael Pedersen, Chrit T. W. Moonen, Thomas Sangild Sorensen 
   International Symposium on Biomedical Imaging, 2008, Paris, France
Brain shift compensation in image-guided neurosurgery based on 3-D ultrasound 
   Pierrick Coupé 
   Signal and Image processing. Université Rennes 1, 2008. English. ⟨NNT : ⟩
2007
MR-thermometry for monitoring tumor ablation 
   Baudouin Denis de Senneville, Charles Mougenot, Bruno Quesson, Iulus Dragonu, Nicolas Grenier, Chrit T. W. Moonen 
   European Radiology, 2007, pp.2401-2410
Therapies by focus ultrasound 
   Nicolas Grenier, Hervé Trillaud, J. Palussiere, Charles Mougenot, Bruno Quesson, Baudouin Denis de Senneville, Chrit T. W. Moonen 
   Journal de Radiologie, 2007, pp.1787-1800
Simulation of biphasic CT findings in hepatic cellular carcinoma by a two-level physiological model. 
   Marek Kretowski, Johanne Bezy-Wendling, Pierrick Coupé 
   IEEE Transactions on Biomedical Engineering, 2007, 54 (3), pp.538-42. ⟨10.1109/TBME.2006.888834⟩
Real-time adaptive methods for treatment of mobile organs by MRI-controlled high-intensity focused ultrasound 
   Baudouin Denis de Senneville, Charles Mougenot, Chrit Moonen 
   Magnetic Resonance in Medicine, 2007, 57 (2), pp.319-330. ⟨10.1002/mrm.21124⟩
Probe Trajectory Interpolation for 3D Reconstruction of Freehand Ultrasound 
   Pierrick Coupé, Pierre Hellier, Xavier Morandi, Christian Barillot 
   Medical Image Analysis, 2007
MR-thermometry for monitoring tumor ablation 
   Baudouin Denis de Senneville, Charles Mougenot, Bruno Quesson, Dragonu Iulius, Nicolas Grenier, Chrit T. W. Moonen 
   European Radiology, 2007, 17 (9), pp.2401-2410. ⟨10.1007/s00330-007-0646-6⟩
Non-local means variants for denoising of diffusion-weighted and diffusion tensor MRI. 
   Nicolas Wiest-Daesslé, Sylvain Prima, Pierrick Coupé, Sean Patrick Morrissey, Christian Barillot 
   10th International Conference on Medical Image Computing and Computer-Assisted Intervention, Oct 2007, Brisbane, Australia. pp.344-51, ⟨10.1007/978-3-540-75759-7_42⟩
PCA-Based Image Registration : Application to On-Line MR Temperature Monitoring of Moving Tissues 
   Gregory Maclair, Baudouin Denis de Senneville, Michal Ries, Pascal Desbarats, Jenny Benois-Pineau, Chrit T. W. Moonen 
   2007 IEEE International Conference on Image Processing, Sep 2007, San Antonio, TX, United States. pp.III-141-III-144, ⟨10.1109/ICIP.2007.4379266⟩
Bayesian non-local means filter, image redundancy and adaptive dictionaries for noise removal 
   Charles Kervrann, Jérôme Boulanger, Pierrick Coupé 
   SSVM’07 Proceedings of the 1st international conference on Scale space and variational methods in computer vision, May 2007, Ischia, Italy. pp.520-532
Image Guidance in neurosurgical procedures, the “VISAGES” point of view 
   Christian Barillot, Pierrick Coupé, Bernard Gibaud, Pierre Hellier, Pierre Jannin, Xavier Morandi, Perrine Paul, Sylvain Prima, Nicolas Wiest-Daesslé, Omar El Ganaoui 
   4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2007, Arlington, United States. pp.1056-1059, ⟨10.1109/ISBI.2007.357037⟩
A PROBABILISTIC OBJECTIVE FUNCTION FOR 3D RIGID REGISTRATION OF INTRAOPERATIVE US AND PREOPERATIVE MR BRAIN IMAGES 
   Pierrick Coupé, Pierre Hellier, Xavier Morandi, Christian Barillot 
   IEEE International Symposium on Biomedical Imaging: From Nano to Macro, IEEE Signal Processing Society (SPS) and the IEEE Engineering in Medicine and Biology Society (EMBS), Apr 2007, Washington DC, USA, United States. pp.1320-1323, ⟨10.1109/ISBI.2007.357103⟩
ROBUST SPATIAL PHASE UNWRAPPING FOR ON-LINE MR-TEMPERATURE MONITORING 
   Baudouin Denis de Senneville, G. Maclair, Mario Ries, P. Desbarats, B. Quesson, C.T.W. Moonen 
   Proceedings of IEEE ICIP Conference 2007, San Antonio, 2007, United States. pp.III - 137-III
PCA-based magnetic field modeling: application for on-line MR temperature monitoring 
   G. Maclair, Baudouin Denis de Senneville, Mario Ries, Bruno Quesson, Pascal Desbarats, Jenny Benois-Pineau, Chrit Moonen 
   Medical Image Computing and Computer-Assisted Intervention, 2007, Brisbane, Australia. pp.411-129
PCA-BASED IMAGE REGISTRATION : APPLICATION TO ON-LINE MR TEMPERATURE OF MOVING TISSUES 
   G. Maclair, Baudouin Denis de Senneville, Mario Ries, B. Quesson, Pascal Desbarats, Jenny Benois-Pineau, C.T.W. Moonen 
   IEEE International Conference on Image Processing (ICIP), 2007, San Antonio, United States. pp.III - 141-III
2006
Real time adaptive methods for treatment of mobile organs by MRI controlled High Intensity Focused Ultrasound 
   Baudouin Denis de Senneville, C. Mougenot, C.T.W. Moonen 
   Magnetic Resonance in Medicine, 2006, pp.319-30
Fast Non Local Means Denoising for 3D MR Images 
   Pierrick Coupé, Pierre Yger, Christian Barillot 
   9th International Conference on Medical Image Computing and Computer-Assisted Intervention, Oct 2006, Copenhagen, Denmark, pp.33-40, ⟨10.1007/11866763_5⟩
Automatic Kidney Tracking for MR Glomerular Filtation Analysis 
   Baudouin Denis de Senneville, P. Desbarats, Mario Ries, C.T.W. Moonen, N. Grenier 
   European Society of Urogenital Radiology, Sep 2006, United Kingdom. pp.2837-2840
On-Line Mobile Organ Tracking For Non-Invasive Local Hyperthermia 
   Baudouin Denis de Senneville, C. Mougenot, P. Desbarats, C.T.W. Moonen 
   IEEE ICIP06, 2006, United States. pp.2845–2848
Automatic region tracking for motion correction in MR perfusion imaging of the kidney 
   Baudouin Denis de Senneville, N. Grenier, Mario Ries, P. Desbarats, C.T.W. Moonen 
   ISMRM, 2006, United States. pp.00
A method for large vessels/brain activity colocalization 
   Cédric Aguerre, P. Desbarats, Baudouin Denis de Senneville, C.T.W. Moonen 
   IEEE ICIP06, 2006, United States. pp.2849–2852
Automatic Region Tracking For MR Glomerular Filtration Rate Analysis 
   Baudouin Denis de Senneville, Mario Ries, P. Desbarats, C.T.W. Moonen, N. Grenier 
   IEEE ICIP06, 2006, United States. pp.2837–2840
Image processing for on-line reduction of thermometry artifacts 
   Baudouin Denis de Senneville, B. Quesson, P. Desbarats, C. Mougenot, C.T.W. Moonen 
   ISMRM, 2006, United States. pp.319 - 330
2005
Magnetic Resonance Temperature imaging 
   Baudouin Denis de Senneville, B. Quesson, C.T.W. Moonen 
   International Journal of Hyperthermia, 2005, 21, pp.515–531
Magnetic Resonance Temperature Imaging 
   Baudouin Denis de Senneville, Bruno Quesson, Chrit T. W. Moonen 
   International Journal of Hyperthermia, 2005, 21 (6), pp.515-531. ⟨10.1080/02656730500133785⟩
3D Freehand Ultrasound Reconstruction based on Probe Trajectory 
   Pierrick Coupé, Pierre Hellier, Noura Azzabou, Christian Barillot 
   8th International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2005, Palm Springs, USA, pp.597-604, ⟨10.1007/11566465_74⟩
HIFU treatement of mobile organs under MR control 
   Baudouin Denis de Senneville, C. Mougenot, C.T.W. Moonen 
   ISTU, 5th annual meeting, 2005, United States
Dynamic cardiac MR temperature imaging with the Proton Resonance Frequency technique: a study on the feasibility and accuracy 
   B. Quesson, Baudouin Denis de Senneville, G. Hérigault, Pierre Jaïs, C.T.W. Moonen 
   ISMRM, 2005, United States. pp.408-416
3D Motion Estimation For On-Line MR Temperature Mapping 
   Baudouin Denis de Senneville, B. Quesson, P. Desbarats, C.T.W. Moonen 
   IEEE ICIP 2005, Genova, 2005, Italy. pp.III - 101-4
Faisabilité et précision in vivo du monitorage IRM temps réel à 1,5T par carte de dose thermique des thermo-ablations RF hépatique: corrélation anatomopathologique sur foie de porc 
   M. Lepetit-Coiffé, O. Séror, Baudouin Denis de Senneville, B. Lebail, C.T.W. Moonen, H. Trillaud, B. Quesson 
   Société Française de Radiologie, 2005, France
Feasibility and Accuracy of Real Time Monitoring with Motion Corrected Quantitative MR Thermal Dose Mapping for In Vivo Radiofrequency Ablation in Pig Liver 
   M. Lepetit-Coiffé, O. Séror, Baudouin Denis de Senneville, B. Lebail, C.T.W. Moonen, H. Trillaud, B. Quesson 
   ESGAR, 2005, Italy
2004
Stability of real-time MR temperature mapping in healthy and diseased human liver 
   C. Weidensteiner, N. Kerioui, B. Quesson, Baudouin Denis de Senneville, H. Trillaud, C.T.W. Moonen 
   Journal of Magnetic Resonance Imaging, 2004, 19, pp.438–446
Stability of real-time MR temperature mapping in healthy and diseased human liver 
   Claudia Weidensteiner, Noureddine Kerioui, Bruno Quesson, Baudouin Denis de Senneville, Hervé Trillaud, Chrit Moonen 
   Journal of Magnetic Resonance Imaging, 2004, 19 (4), pp.438-446. ⟨10.1002/jmri.20019⟩
Accurate temperature mapping in breast tumours using fast, PRF-based, gated MR thermometry 
   R. Salomir, J. Palussiiere, G. Herigault, Baudouin Denis de Senneville, N. Grenier, C.T.W. Moonen 
   ESMRMB 21st annual meeting, Sep 2004, Denmark
High frequency ultrasound characterization of the coagulation process of whole blood 
   Frédéric Ossant, R. Libgot, Pierrick Coupé, P. Lermusiaux, Frédéric Patat 
   IEEE Ultrasonics Symposium, Aug 2004, Montréal, Canada. pp.846-849, ⟨10.1109/ULTSYM.2004.1417869⟩
Modeling of tumor conspicuity in hepatic CT images: combined compartment and vascular models 
   Johanne Bézy-Wendling, Marek Kretowski, Pierrick Coupé 
   Biomedical Imaging: Nano to Macro, 2004. IEEE International Symposium on, Apr 2004, United States. pp.444-447, ⟨10.1109/ISBI.2004.1398570⟩
Atlas-Based Motion Correction For On-Line MR Temperature Mapping 
   Baudouin Denis de Senneville, B. Quesson, P. Desbarats, R. Salomir, J. Palussière, C.T.W. Moonen 
   Proceedings of IEEE ICIP 2004, Singapore, 2004, China. pp.2571–2574
Correction of Accidental Patient Motion For On-line MR Thermometry 
   Baudouin Denis de Senneville, P. Desbarats, R. Salomir, B. Quesson, C.T.W. Moonen 
   Proceedings of MICCAI 2004, Saint-Malo, 2004, France. pp.637–644
2003
A fast calculation method for magnetic field inhomogeneity due to an arbitrary distribution of bulk susceptibility 
   R. Salomir, Baudouin Denis de Senneville, C.T.W. Moonen 
   Concepts in Magnetic Resonance Part B: Magnetic Resonance Engineering, 2003, 19B, pp.26–34
Real-Time Artefact Corrections For Quantitative MR Temperature Mapping 
   Baudouin Denis de Senneville, P. Desbarats, B. Quesson, C.T.W. Moonen 
   Journal of WSCG, 2003, Czech Republic. pp.87–94
2002
On-line high order correction of PRF thermometry for the magnetic perturbation due to the movement of a FUS transducer (V - 16) 
   R. Salomir, Baudouin Denis de Senneville, C. Mougenot, C.T.W. Moonen 
   4th Interventional MRI Symposium, Sep 2002, Germany. pp.V - 16